Strain Fitness in Serratia liquefaciens MT49 around IAI46_00830

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00820 and IAI46_00825 are separated by 80 nucleotidesIAI46_00825 and IAI46_00830 are separated by 40 nucleotidesIAI46_00830 and IAI46_00835 are separated by 220 nucleotidesIAI46_00835 and IAI46_00840 are separated by 13 nucleotides IAI46_00820: IAI46_00820 - DcrB family lipoprotein, at 187,333 to 187,896 _00820 IAI46_00825: IAI46_00825 - GNAT family N-acetyltransferase, at 187,977 to 188,411 _00825 IAI46_00830: IAI46_00830 - 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter, at 188,452 to 189,117 _00830 IAI46_00835: IAI46_00835 - sulfurtransferase TusA, at 189,338 to 189,589 _00835 IAI46_00840: IAI46_00840 - DUF4056 domain-containing protein, at 189,603 to 190,724 _00840 Position (kb) 188 189 190Strain fitness (log2 ratio) -2 -1 0 1 2at 187.463 kb on + strand, within IAI46_00820at 187.463 kb on + strand, within IAI46_00820at 187.463 kb on + strand, within IAI46_00820at 187.486 kb on - strand, within IAI46_00820at 187.486 kb on - strand, within IAI46_00820at 187.578 kb on + strand, within IAI46_00820at 187.722 kb on + strand, within IAI46_00820at 187.749 kb on + strand, within IAI46_00820at 187.750 kb on - strand, within IAI46_00820at 187.750 kb on - strand, within IAI46_00820at 187.765 kb on + strand, within IAI46_00820at 187.765 kb on + strand, within IAI46_00820at 187.765 kb on + strand, within IAI46_00820at 187.766 kb on - strand, within IAI46_00820at 187.766 kb on - strand, within IAI46_00820at 187.859 kb on - strandat 187.936 kb on + strandat 187.946 kb on + strandat 187.946 kb on + strandat 187.947 kb on - strandat 187.995 kb on + strandat 187.995 kb on + strandat 187.995 kb on + strandat 187.996 kb on - strandat 187.999 kb on - strandat 188.048 kb on - strand, within IAI46_00825at 188.061 kb on - strand, within IAI46_00825at 188.061 kb on - strand, within IAI46_00825at 188.091 kb on - strand, within IAI46_00825at 188.117 kb on - strand, within IAI46_00825at 188.182 kb on + strand, within IAI46_00825at 188.193 kb on + strand, within IAI46_00825at 188.193 kb on + strand, within IAI46_00825at 188.194 kb on - strand, within IAI46_00825at 188.212 kb on + strand, within IAI46_00825at 188.212 kb on + strand, within IAI46_00825at 188.362 kb on + strand, within IAI46_00825at 188.363 kb on - strand, within IAI46_00825at 188.430 kb on - strandat 188.443 kb on + strandat 188.444 kb on - strandat 188.444 kb on - strandat 188.444 kb on - strandat 188.444 kb on - strandat 188.508 kb on + strandat 188.509 kb on - strandat 188.525 kb on + strand, within IAI46_00830at 188.525 kb on + strand, within IAI46_00830at 188.570 kb on + strand, within IAI46_00830at 188.627 kb on + strand, within IAI46_00830at 188.627 kb on + strand, within IAI46_00830at 188.628 kb on - strand, within IAI46_00830at 188.637 kb on + strand, within IAI46_00830at 188.637 kb on + strand, within IAI46_00830at 188.637 kb on + strand, within IAI46_00830at 188.665 kb on - strand, within IAI46_00830at 188.720 kb on - strand, within IAI46_00830at 188.737 kb on + strand, within IAI46_00830at 188.738 kb on - strand, within IAI46_00830at 188.738 kb on - strand, within IAI46_00830at 188.763 kb on - strand, within IAI46_00830at 188.763 kb on - strand, within IAI46_00830at 188.763 kb on - strand, within IAI46_00830at 188.788 kb on - strand, within IAI46_00830at 188.811 kb on + strand, within IAI46_00830at 188.846 kb on + strand, within IAI46_00830at 188.846 kb on + strand, within IAI46_00830at 188.847 kb on - strand, within IAI46_00830at 188.847 kb on - strand, within IAI46_00830at 188.847 kb on - strand, within IAI46_00830at 188.867 kb on + strand, within IAI46_00830at 188.867 kb on + strand, within IAI46_00830at 188.867 kb on + strand, within IAI46_00830at 188.868 kb on - strand, within IAI46_00830at 188.868 kb on - strand, within IAI46_00830at 188.874 kb on + strand, within IAI46_00830at 188.875 kb on - strand, within IAI46_00830at 188.875 kb on - strand, within IAI46_00830at 188.963 kb on - strand, within IAI46_00830at 188.964 kb on + strand, within IAI46_00830at 188.965 kb on - strand, within IAI46_00830at 188.976 kb on + strand, within IAI46_00830at 188.977 kb on - strand, within IAI46_00830at 188.977 kb on - strand, within IAI46_00830at 188.995 kb on - strand, within IAI46_00830at 189.032 kb on + strand, within IAI46_00830at 189.032 kb on + strand, within IAI46_00830at 189.033 kb on - strand, within IAI46_00830at 189.033 kb on - strand, within IAI46_00830at 189.036 kb on + strand, within IAI46_00830at 189.046 kb on - strand, within IAI46_00830at 189.057 kb on + strandat 189.088 kb on - strandat 189.088 kb on - strandat 189.113 kb on + strandat 189.113 kb on + strandat 189.113 kb on + strandat 189.114 kb on - strandat 189.122 kb on + strandat 189.122 kb on + strandat 189.123 kb on - strandat 189.131 kb on + strandat 189.199 kb on - strandat 189.280 kb on + strandat 189.280 kb on + strandat 189.280 kb on + strandat 189.281 kb on - strandat 189.619 kb on - strandat 189.679 kb on + strandat 189.848 kb on - strand, within IAI46_00840at 189.858 kb on + strand, within IAI46_00840at 190.003 kb on + strand, within IAI46_00840at 190.003 kb on + strand, within IAI46_00840at 190.037 kb on + strand, within IAI46_00840at 190.037 kb on + strand, within IAI46_00840at 190.037 kb on + strand, within IAI46_00840at 190.038 kb on - strand, within IAI46_00840at 190.038 kb on - strand, within IAI46_00840at 190.038 kb on - strand, within IAI46_00840at 190.075 kb on + strand, within IAI46_00840

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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187,463 + IAI46_00820 0.23 +0.4
187,463 + IAI46_00820 0.23 -0.1
187,463 + IAI46_00820 0.23 +0.2
187,486 - IAI46_00820 0.27 +0.3
187,486 - IAI46_00820 0.27 -0.5
187,578 + IAI46_00820 0.43 -0.8
187,722 + IAI46_00820 0.69 +0.0
187,749 + IAI46_00820 0.74 -0.6
187,750 - IAI46_00820 0.74 -0.1
187,750 - IAI46_00820 0.74 -1.0
187,765 + IAI46_00820 0.77 -0.2
187,765 + IAI46_00820 0.77 +1.1
187,765 + IAI46_00820 0.77 +0.2
187,766 - IAI46_00820 0.77 +0.2
187,766 - IAI46_00820 0.77 +0.8
187,859 - -0.0
187,936 + +0.0
187,946 + +0.4
187,946 + +0.6
187,947 - +0.6
187,995 + -1.7
187,995 + -0.2
187,995 + +0.1
187,996 - +0.1
187,999 - -0.8
188,048 - IAI46_00825 0.16 +0.5
188,061 - IAI46_00825 0.19 +0.0
188,061 - IAI46_00825 0.19 +0.6
188,091 - IAI46_00825 0.26 -0.4
188,117 - IAI46_00825 0.32 +0.0
188,182 + IAI46_00825 0.47 +0.5
188,193 + IAI46_00825 0.50 -0.5
188,193 + IAI46_00825 0.50 +0.1
188,194 - IAI46_00825 0.50 +0.1
188,212 + IAI46_00825 0.54 +0.2
188,212 + IAI46_00825 0.54 -0.6
188,362 + IAI46_00825 0.89 +1.7
188,363 - IAI46_00825 0.89 +0.1
188,430 - +0.7
188,443 + +0.0
188,444 - -0.7
188,444 - +0.3
188,444 - -0.1
188,444 - -0.6
188,508 + -2.3
188,509 - -0.4
188,525 + IAI46_00830 0.11 -1.3
188,525 + IAI46_00830 0.11 -0.1
188,570 + IAI46_00830 0.18 +0.2
188,627 + IAI46_00830 0.26 +0.7
188,627 + IAI46_00830 0.26 -0.4
188,628 - IAI46_00830 0.26 -0.2
188,637 + IAI46_00830 0.28 +0.7
188,637 + IAI46_00830 0.28 -0.6
188,637 + IAI46_00830 0.28 -0.4
188,665 - IAI46_00830 0.32 +0.7
188,720 - IAI46_00830 0.40 +0.0
188,737 + IAI46_00830 0.43 -1.2
188,738 - IAI46_00830 0.43 +1.5
188,738 - IAI46_00830 0.43 -0.7
188,763 - IAI46_00830 0.47 +1.0
188,763 - IAI46_00830 0.47 +0.3
188,763 - IAI46_00830 0.47 +0.6
188,788 - IAI46_00830 0.50 +0.4
188,811 + IAI46_00830 0.54 -0.2
188,846 + IAI46_00830 0.59 -0.3
188,846 + IAI46_00830 0.59 -0.1
188,847 - IAI46_00830 0.59 +0.0
188,847 - IAI46_00830 0.59 +0.1
188,847 - IAI46_00830 0.59 +1.4
188,867 + IAI46_00830 0.62 -0.5
188,867 + IAI46_00830 0.62 +0.7
188,867 + IAI46_00830 0.62 +1.0
188,868 - IAI46_00830 0.62 +0.2
188,868 - IAI46_00830 0.62 +0.5
188,874 + IAI46_00830 0.63 +0.6
188,875 - IAI46_00830 0.64 -0.2
188,875 - IAI46_00830 0.64 +0.5
188,963 - IAI46_00830 0.77 +0.9
188,964 + IAI46_00830 0.77 +0.0
188,965 - IAI46_00830 0.77 +0.5
188,976 + IAI46_00830 0.79 -0.3
188,977 - IAI46_00830 0.79 +0.1
188,977 - IAI46_00830 0.79 -0.1
188,995 - IAI46_00830 0.82 +0.2
189,032 + IAI46_00830 0.87 +0.4
189,032 + IAI46_00830 0.87 -0.2
189,033 - IAI46_00830 0.87 -0.2
189,033 - IAI46_00830 0.87 +0.6
189,036 + IAI46_00830 0.88 -0.7
189,046 - IAI46_00830 0.89 -0.1
189,057 + +0.5
189,088 - -0.3
189,088 - -0.3
189,113 + +0.4
189,113 + +0.3
189,113 + -0.4
189,114 - +0.8
189,122 + +0.2
189,122 + +0.2
189,123 - +2.7
189,131 + +0.5
189,199 - -0.5
189,280 + -0.5
189,280 + -0.4
189,280 + +0.2
189,281 - -0.8
189,619 - -0.5
189,679 + +0.5
189,848 - IAI46_00840 0.22 +0.5
189,858 + IAI46_00840 0.23 +0.7
190,003 + IAI46_00840 0.36 -0.9
190,003 + IAI46_00840 0.36 +0.6
190,037 + IAI46_00840 0.39 +0.4
190,037 + IAI46_00840 0.39 +0.4
190,037 + IAI46_00840 0.39 +0.4
190,038 - IAI46_00840 0.39 +0.4
190,038 - IAI46_00840 0.39 +0.1
190,038 - IAI46_00840 0.39 -1.2
190,075 + IAI46_00840 0.42 -1.4

Or see this region's nucleotide sequence