Strain Fitness in Serratia liquefaciens MT49 around IAI46_00360

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_00345 and IAI46_00350 are separated by 144 nucleotidesIAI46_00350 and IAI46_00355 are separated by 36 nucleotidesIAI46_00355 and IAI46_00360 are separated by 104 nucleotidesIAI46_00360 and IAI46_00365 are separated by 68 nucleotidesIAI46_00365 and IAI46_00370 are separated by 24 nucleotides IAI46_00345: IAI46_00345 - histidine phosphatase family protein, at 79,234 to 79,821 _00345 IAI46_00350: IAI46_00350 - DUF4282 domain-containing protein, at 79,966 to 80,202 _00350 IAI46_00355: IAI46_00355 - HIT family protein, at 80,239 to 80,661 _00355 IAI46_00360: IAI46_00360 - LacI family DNA-binding transcriptional regulator, at 80,766 to 81,803 _00360 IAI46_00365: IAI46_00365 - SDR family oxidoreductase, at 81,872 to 82,633 _00365 IAI46_00370: IAI46_00370 - TRAP transporter large permease subunit, at 82,658 to 84,529 _00370 Position (kb) 80 81 82Strain fitness (log2 ratio) -2 -1 0 1at 79.832 kb on + strandat 79.832 kb on + strandat 79.833 kb on - strandat 79.833 kb on - strandat 79.833 kb on - strandat 79.836 kb on + strandat 79.836 kb on + strandat 79.836 kb on + strandat 79.836 kb on + strandat 79.837 kb on - strandat 79.837 kb on - strandat 79.837 kb on - strandat 79.880 kb on + strandat 79.881 kb on - strandat 79.885 kb on + strandat 79.885 kb on + strandat 79.885 kb on + strandat 79.885 kb on + strandat 79.885 kb on + strandat 79.885 kb on + strandat 79.938 kb on + strandat 79.939 kb on - strandat 79.939 kb on - strandat 79.942 kb on + strandat 79.950 kb on + strandat 79.951 kb on - strandat 79.962 kb on + strandat 79.962 kb on + strandat 80.023 kb on + strand, within IAI46_00350at 80.200 kb on + strandat 80.205 kb on - strandat 80.205 kb on - strandat 80.205 kb on - strandat 80.205 kb on - strandat 80.205 kb on - strandat 80.209 kb on - strandat 80.366 kb on + strand, within IAI46_00355at 80.367 kb on - strand, within IAI46_00355at 80.379 kb on + strand, within IAI46_00355at 80.379 kb on + strand, within IAI46_00355at 80.379 kb on + strand, within IAI46_00355at 80.379 kb on + strand, within IAI46_00355at 80.380 kb on - strand, within IAI46_00355at 80.380 kb on - strand, within IAI46_00355at 80.380 kb on - strand, within IAI46_00355at 80.380 kb on - strand, within IAI46_00355at 80.452 kb on + strand, within IAI46_00355at 80.453 kb on - strand, within IAI46_00355at 80.640 kb on - strandat 80.732 kb on - strandat 80.767 kb on + strandat 80.768 kb on - strandat 80.768 kb on - strandat 80.768 kb on - strandat 80.774 kb on + strandat 80.775 kb on - strandat 80.775 kb on - strandat 80.802 kb on - strandat 81.039 kb on + strand, within IAI46_00360at 81.039 kb on + strand, within IAI46_00360at 81.040 kb on - strand, within IAI46_00360at 81.371 kb on + strand, within IAI46_00360at 81.371 kb on + strand, within IAI46_00360at 81.372 kb on - strand, within IAI46_00360at 81.372 kb on - strand, within IAI46_00360at 81.372 kb on - strand, within IAI46_00360at 81.421 kb on + strand, within IAI46_00360at 81.438 kb on + strand, within IAI46_00360at 81.438 kb on + strand, within IAI46_00360at 81.439 kb on - strand, within IAI46_00360at 81.439 kb on - strand, within IAI46_00360at 81.439 kb on - strand, within IAI46_00360at 81.439 kb on - strand, within IAI46_00360at 81.441 kb on + strand, within IAI46_00360at 81.441 kb on + strand, within IAI46_00360at 81.442 kb on - strand, within IAI46_00360at 81.442 kb on - strand, within IAI46_00360at 81.442 kb on - strand, within IAI46_00360at 81.457 kb on - strand, within IAI46_00360at 81.535 kb on + strand, within IAI46_00360at 81.536 kb on - strand, within IAI46_00360at 81.638 kb on + strand, within IAI46_00360at 81.638 kb on + strand, within IAI46_00360at 81.639 kb on - strand, within IAI46_00360at 81.667 kb on + strand, within IAI46_00360at 81.667 kb on + strand, within IAI46_00360at 81.668 kb on - strand, within IAI46_00360at 81.668 kb on - strand, within IAI46_00360at 81.792 kb on + strandat 81.793 kb on - strandat 81.794 kb on + strandat 81.794 kb on + strandat 81.794 kb on + strandat 81.794 kb on + strandat 81.794 kb on + strandat 81.795 kb on - strandat 81.795 kb on - strandat 81.795 kb on - strandat 81.842 kb on - strandat 81.842 kb on - strandat 81.874 kb on - strandat 81.904 kb on + strandat 81.919 kb on + strandat 81.919 kb on + strandat 81.920 kb on - strandat 81.921 kb on + strandat 81.921 kb on + strandat 81.922 kb on - strandat 81.922 kb on - strandat 81.928 kb on + strandat 81.934 kb on + strandat 81.935 kb on - strandat 81.935 kb on - strandat 81.954 kb on + strand, within IAI46_00365at 81.954 kb on + strand, within IAI46_00365at 81.954 kb on + strand, within IAI46_00365at 81.954 kb on + strand, within IAI46_00365at 81.954 kb on + strand, within IAI46_00365at 81.955 kb on - strand, within IAI46_00365at 82.015 kb on + strand, within IAI46_00365at 82.079 kb on - strand, within IAI46_00365at 82.158 kb on + strand, within IAI46_00365at 82.158 kb on + strand, within IAI46_00365at 82.159 kb on - strand, within IAI46_00365at 82.159 kb on - strand, within IAI46_00365at 82.388 kb on - strand, within IAI46_00365at 82.525 kb on + strand, within IAI46_00365at 82.743 kb on + strandat 82.743 kb on + strandat 82.743 kb on + strandat 82.743 kb on + strandat 82.744 kb on - strandat 82.744 kb on - strandat 82.744 kb on - strandat 82.753 kb on + strandat 82.759 kb on + strandat 82.760 kb on - strandat 82.803 kb on + strandat 82.803 kb on + strandat 82.803 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
remove
79,832 + -0.1
79,832 + +0.2
79,833 - -0.5
79,833 - -0.7
79,833 - -0.8
79,836 + -0.4
79,836 + +0.9
79,836 + +0.8
79,836 + +0.8
79,837 - -0.2
79,837 - +0.3
79,837 - +0.3
79,880 + -0.3
79,881 - +0.3
79,885 + +0.0
79,885 + -0.7
79,885 + -0.4
79,885 + -0.9
79,885 + -1.2
79,885 + -1.0
79,938 + -0.0
79,939 - +0.0
79,939 - +0.8
79,942 + -0.2
79,950 + -0.1
79,951 - +0.2
79,962 + -0.2
79,962 + +0.6
80,023 + IAI46_00350 0.24 -0.5
80,200 + -1.3
80,205 - -0.4
80,205 - -0.9
80,205 - -0.5
80,205 - +0.4
80,205 - +0.5
80,209 - +0.1
80,366 + IAI46_00355 0.30 -1.1
80,367 - IAI46_00355 0.30 +0.3
80,379 + IAI46_00355 0.33 +0.2
80,379 + IAI46_00355 0.33 -0.2
80,379 + IAI46_00355 0.33 -0.3
80,379 + IAI46_00355 0.33 +0.5
80,380 - IAI46_00355 0.33 +0.5
80,380 - IAI46_00355 0.33 +0.3
80,380 - IAI46_00355 0.33 -1.6
80,380 - IAI46_00355 0.33 +0.7
80,452 + IAI46_00355 0.50 +0.4
80,453 - IAI46_00355 0.51 -2.2
80,640 - -1.0
80,732 - -0.3
80,767 + +0.7
80,768 - +0.7
80,768 - +0.7
80,768 - +0.3
80,774 + -0.1
80,775 - +0.2
80,775 - -0.1
80,802 - -0.2
81,039 + IAI46_00360 0.26 -0.3
81,039 + IAI46_00360 0.26 -0.3
81,040 - IAI46_00360 0.26 +0.7
81,371 + IAI46_00360 0.58 +0.4
81,371 + IAI46_00360 0.58 +0.6
81,372 - IAI46_00360 0.58 +0.8
81,372 - IAI46_00360 0.58 +0.6
81,372 - IAI46_00360 0.58 +0.4
81,421 + IAI46_00360 0.63 +0.2
81,438 + IAI46_00360 0.65 -0.9
81,438 + IAI46_00360 0.65 +0.8
81,439 - IAI46_00360 0.65 +0.4
81,439 - IAI46_00360 0.65 -0.4
81,439 - IAI46_00360 0.65 -0.1
81,439 - IAI46_00360 0.65 +0.5
81,441 + IAI46_00360 0.65 -0.6
81,441 + IAI46_00360 0.65 -0.5
81,442 - IAI46_00360 0.65 -0.5
81,442 - IAI46_00360 0.65 +0.6
81,442 - IAI46_00360 0.65 -0.4
81,457 - IAI46_00360 0.67 -0.4
81,535 + IAI46_00360 0.74 +0.2
81,536 - IAI46_00360 0.74 +0.7
81,638 + IAI46_00360 0.84 +0.1
81,638 + IAI46_00360 0.84 -0.0
81,639 - IAI46_00360 0.84 +0.1
81,667 + IAI46_00360 0.87 -1.1
81,667 + IAI46_00360 0.87 +0.2
81,668 - IAI46_00360 0.87 +0.2
81,668 - IAI46_00360 0.87 -0.2
81,792 + +0.9
81,793 - -0.2
81,794 + -0.1
81,794 + -0.1
81,794 + +0.6
81,794 + -1.1
81,794 + -0.3
81,795 - +0.2
81,795 - +0.1
81,795 - +0.4
81,842 - -0.1
81,842 - -1.9
81,874 - -1.2
81,904 + +0.6
81,919 + -0.3
81,919 + +0.2
81,920 - +0.5
81,921 + +0.1
81,921 + +0.1
81,922 - +1.7
81,922 - +0.4
81,928 + -0.1
81,934 + +0.3
81,935 - +0.7
81,935 - +0.2
81,954 + IAI46_00365 0.11 +0.8
81,954 + IAI46_00365 0.11 +0.2
81,954 + IAI46_00365 0.11 +0.7
81,954 + IAI46_00365 0.11 -0.1
81,954 + IAI46_00365 0.11 -0.3
81,955 - IAI46_00365 0.11 +0.3
82,015 + IAI46_00365 0.19 -0.0
82,079 - IAI46_00365 0.27 -0.1
82,158 + IAI46_00365 0.38 -0.4
82,158 + IAI46_00365 0.38 -0.1
82,159 - IAI46_00365 0.38 +0.1
82,159 - IAI46_00365 0.38 -1.7
82,388 - IAI46_00365 0.68 -0.1
82,525 + IAI46_00365 0.86 -0.4
82,743 + -0.3
82,743 + +0.9
82,743 + -0.3
82,743 + +0.3
82,744 - +0.2
82,744 - +0.4
82,744 - -0.7
82,753 + +0.4
82,759 + -0.4
82,760 - +0.4
82,803 + -0.0
82,803 + -0.0
82,803 + -0.4

Or see this region's nucleotide sequence