Strain Fitness in Serratia liquefaciens MT49 around IAI46_00250

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00245 and IAI46_00250 are separated by 476 nucleotidesIAI46_00250 and IAI46_00255 are separated by 219 nucleotides IAI46_00245: IAI46_00245 - selenocysteine-specific translation elongation factor, at 55,594 to 57,441 _00245 IAI46_00250: IAI46_00250 - MFS transporter, at 57,918 to 59,165 _00250 IAI46_00255: IAI46_00255 - acyltransferase, at 59,385 to 60,377 _00255 Position (kb) 57 58 59 60Strain fitness (log2 ratio) -2 -1 0 1at 56.970 kb on + strand, within IAI46_00245at 56.970 kb on + strand, within IAI46_00245at 57.002 kb on + strand, within IAI46_00245at 57.003 kb on - strand, within IAI46_00245at 57.003 kb on - strand, within IAI46_00245at 57.006 kb on + strand, within IAI46_00245at 57.007 kb on - strand, within IAI46_00245at 57.007 kb on - strand, within IAI46_00245at 57.012 kb on + strand, within IAI46_00245at 57.013 kb on - strand, within IAI46_00245at 57.177 kb on + strand, within IAI46_00245at 57.178 kb on - strand, within IAI46_00245at 57.178 kb on - strand, within IAI46_00245at 57.178 kb on - strand, within IAI46_00245at 57.224 kb on - strand, within IAI46_00245at 57.226 kb on + strand, within IAI46_00245at 57.226 kb on + strand, within IAI46_00245at 57.226 kb on + strand, within IAI46_00245at 57.226 kb on + strand, within IAI46_00245at 57.226 kb on + strand, within IAI46_00245at 57.227 kb on - strand, within IAI46_00245at 57.227 kb on - strand, within IAI46_00245at 57.227 kb on - strand, within IAI46_00245at 57.227 kb on - strand, within IAI46_00245at 57.230 kb on + strand, within IAI46_00245at 57.230 kb on + strand, within IAI46_00245at 57.230 kb on + strand, within IAI46_00245at 57.230 kb on + strand, within IAI46_00245at 57.231 kb on - strand, within IAI46_00245at 57.334 kb on - strandat 57.379 kb on - strandat 57.424 kb on + strandat 57.424 kb on + strandat 57.424 kb on + strandat 57.425 kb on - strandat 57.425 kb on - strandat 57.436 kb on - strandat 57.483 kb on + strandat 57.484 kb on - strandat 57.484 kb on - strandat 57.484 kb on - strandat 57.484 kb on - strandat 57.491 kb on + strandat 57.614 kb on + strandat 57.625 kb on - strandat 57.625 kb on - strandat 57.658 kb on + strandat 57.659 kb on - strandat 57.659 kb on - strandat 57.659 kb on - strandat 57.669 kb on + strandat 57.670 kb on - strandat 57.670 kb on - strandat 57.704 kb on + strandat 57.715 kb on + strandat 57.737 kb on + strandat 57.737 kb on + strandat 57.737 kb on + strandat 57.738 kb on - strandat 57.738 kb on - strandat 57.738 kb on - strandat 57.738 kb on - strandat 57.738 kb on - strandat 57.738 kb on - strandat 57.747 kb on + strandat 57.748 kb on - strandat 57.757 kb on + strandat 57.757 kb on + strandat 57.758 kb on - strandat 57.758 kb on - strandat 57.758 kb on - strandat 57.798 kb on + strandat 57.799 kb on - strandat 57.801 kb on + strandat 57.801 kb on + strandat 57.801 kb on + strandat 57.801 kb on + strandat 57.801 kb on + strandat 57.802 kb on - strandat 57.802 kb on - strandat 57.802 kb on - strandat 57.802 kb on - strandat 57.802 kb on - strandat 57.802 kb on - strandat 57.802 kb on - strandat 57.802 kb on - strandat 57.802 kb on - strandat 57.802 kb on - strandat 57.811 kb on + strandat 57.812 kb on - strandat 57.813 kb on + strandat 57.814 kb on - strandat 57.842 kb on + strandat 57.843 kb on - strandat 57.848 kb on + strandat 57.848 kb on + strandat 57.849 kb on - strandat 57.849 kb on - strandat 57.860 kb on - strandat 57.860 kb on - strandat 57.883 kb on + strandat 57.919 kb on + strandat 57.919 kb on + strandat 57.921 kb on + strandat 57.922 kb on - strandat 57.932 kb on + strandat 58.051 kb on + strand, within IAI46_00250at 58.052 kb on - strand, within IAI46_00250at 58.052 kb on - strand, within IAI46_00250at 58.052 kb on - strand, within IAI46_00250at 58.052 kb on - strand, within IAI46_00250at 58.098 kb on + strand, within IAI46_00250at 58.098 kb on + strand, within IAI46_00250at 58.098 kb on + strand, within IAI46_00250at 58.098 kb on + strand, within IAI46_00250at 58.099 kb on - strand, within IAI46_00250at 58.099 kb on - strand, within IAI46_00250at 58.099 kb on - strand, within IAI46_00250at 58.099 kb on - strand, within IAI46_00250at 58.099 kb on - strand, within IAI46_00250at 58.198 kb on + strand, within IAI46_00250at 58.198 kb on + strand, within IAI46_00250at 58.198 kb on + strand, within IAI46_00250at 58.228 kb on + strand, within IAI46_00250at 58.228 kb on + strand, within IAI46_00250at 58.228 kb on + strand, within IAI46_00250at 58.228 kb on + strand, within IAI46_00250at 58.229 kb on - strand, within IAI46_00250at 58.229 kb on - strand, within IAI46_00250at 58.229 kb on - strand, within IAI46_00250at 58.229 kb on - strand, within IAI46_00250at 58.229 kb on - strand, within IAI46_00250at 58.245 kb on + strand, within IAI46_00250at 58.521 kb on + strand, within IAI46_00250at 58.521 kb on + strand, within IAI46_00250at 58.522 kb on - strand, within IAI46_00250at 58.522 kb on - strand, within IAI46_00250at 58.522 kb on - strand, within IAI46_00250at 58.609 kb on + strand, within IAI46_00250at 58.641 kb on + strand, within IAI46_00250at 58.642 kb on - strand, within IAI46_00250at 58.787 kb on - strand, within IAI46_00250at 58.803 kb on - strand, within IAI46_00250at 58.841 kb on + strand, within IAI46_00250at 58.841 kb on + strand, within IAI46_00250at 58.842 kb on - strand, within IAI46_00250at 58.842 kb on - strand, within IAI46_00250at 58.872 kb on - strand, within IAI46_00250at 58.984 kb on + strand, within IAI46_00250at 58.985 kb on - strand, within IAI46_00250at 59.037 kb on + strand, within IAI46_00250at 59.063 kb on + strandat 59.077 kb on + strandat 59.078 kb on - strandat 59.152 kb on - strandat 59.242 kb on + strandat 59.267 kb on - strandat 59.276 kb on - strandat 59.276 kb on - strandat 59.301 kb on + strandat 59.337 kb on + strandat 59.338 kb on - strandat 59.340 kb on - strandat 59.370 kb on - strandat 59.407 kb on + strandat 59.407 kb on + strandat 59.407 kb on + strandat 59.411 kb on + strandat 59.411 kb on + strandat 59.411 kb on + strandat 59.463 kb on + strandat 59.464 kb on - strandat 59.466 kb on + strandat 59.466 kb on + strandat 59.466 kb on + strandat 59.466 kb on + strandat 59.467 kb on - strandat 59.467 kb on - strandat 59.467 kb on - strandat 59.467 kb on - strandat 59.498 kb on + strand, within IAI46_00255at 59.498 kb on + strand, within IAI46_00255at 59.498 kb on + strand, within IAI46_00255at 59.499 kb on - strand, within IAI46_00255at 59.499 kb on - strand, within IAI46_00255at 59.499 kb on - strand, within IAI46_00255at 59.514 kb on - strand, within IAI46_00255at 59.630 kb on + strand, within IAI46_00255at 59.631 kb on - strand, within IAI46_00255at 59.631 kb on - strand, within IAI46_00255at 59.661 kb on + strand, within IAI46_00255at 59.661 kb on + strand, within IAI46_00255at 59.661 kb on + strand, within IAI46_00255at 59.663 kb on + strand, within IAI46_00255at 59.663 kb on + strand, within IAI46_00255at 59.710 kb on + strand, within IAI46_00255at 59.710 kb on + strand, within IAI46_00255at 59.710 kb on + strand, within IAI46_00255at 59.711 kb on - strand, within IAI46_00255at 59.711 kb on - strand, within IAI46_00255at 59.711 kb on - strand, within IAI46_00255at 59.730 kb on + strand, within IAI46_00255at 59.730 kb on + strand, within IAI46_00255at 59.731 kb on - strand, within IAI46_00255at 59.731 kb on - strand, within IAI46_00255at 59.748 kb on + strand, within IAI46_00255at 59.748 kb on + strand, within IAI46_00255at 59.766 kb on + strand, within IAI46_00255at 59.766 kb on + strand, within IAI46_00255at 59.767 kb on - strand, within IAI46_00255at 59.767 kb on - strand, within IAI46_00255at 59.811 kb on + strand, within IAI46_00255at 59.858 kb on + strand, within IAI46_00255at 59.859 kb on - strand, within IAI46_00255at 59.907 kb on + strand, within IAI46_00255at 59.907 kb on + strand, within IAI46_00255at 59.907 kb on + strand, within IAI46_00255at 59.907 kb on + strand, within IAI46_00255at 59.907 kb on + strand, within IAI46_00255at 59.907 kb on + strand, within IAI46_00255at 59.907 kb on + strand, within IAI46_00255at 59.908 kb on - strand, within IAI46_00255at 59.909 kb on + strand, within IAI46_00255at 59.909 kb on + strand, within IAI46_00255at 59.909 kb on + strand, within IAI46_00255at 59.909 kb on + strand, within IAI46_00255at 59.909 kb on + strand, within IAI46_00255at 59.910 kb on - strand, within IAI46_00255at 59.910 kb on - strand, within IAI46_00255at 59.910 kb on - strand, within IAI46_00255at 59.910 kb on - strand, within IAI46_00255at 59.910 kb on - strand, within IAI46_00255at 59.910 kb on - strand, within IAI46_00255at 59.910 kb on - strand, within IAI46_00255at 59.910 kb on - strand, within IAI46_00255at 59.913 kb on + strand, within IAI46_00255at 59.913 kb on + strand, within IAI46_00255at 59.913 kb on + strand, within IAI46_00255at 59.913 kb on + strand, within IAI46_00255at 59.914 kb on - strand, within IAI46_00255at 59.914 kb on - strand, within IAI46_00255at 59.914 kb on - strand, within IAI46_00255at 59.914 kb on - strand, within IAI46_00255at 59.929 kb on - strand, within IAI46_00255at 59.940 kb on + strand, within IAI46_00255at 59.941 kb on - strand, within IAI46_00255at 60.007 kb on + strand, within IAI46_00255at 60.074 kb on + strand, within IAI46_00255at 60.075 kb on - strand, within IAI46_00255at 60.075 kb on - strand, within IAI46_00255at 60.086 kb on + strand, within IAI46_00255at 60.087 kb on - strand, within IAI46_00255at 60.090 kb on + strand, within IAI46_00255at 60.090 kb on + strand, within IAI46_00255at 60.090 kb on + strand, within IAI46_00255at 60.090 kb on + strand, within IAI46_00255at 60.091 kb on - strand, within IAI46_00255at 60.091 kb on - strand, within IAI46_00255at 60.091 kb on - strand, within IAI46_00255at 60.091 kb on - strand, within IAI46_00255at 60.091 kb on - strand, within IAI46_00255at 60.091 kb on - strand, within IAI46_00255at 60.093 kb on + strand, within IAI46_00255at 60.093 kb on + strand, within IAI46_00255at 60.093 kb on + strand, within IAI46_00255at 60.094 kb on - strand, within IAI46_00255at 60.094 kb on - strand, within IAI46_00255at 60.094 kb on - strand, within IAI46_00255at 60.099 kb on + strand, within IAI46_00255at 60.099 kb on + strand, within IAI46_00255at 60.099 kb on + strand, within IAI46_00255at 60.100 kb on - strand, within IAI46_00255at 60.100 kb on - strand, within IAI46_00255at 60.142 kb on + strand, within IAI46_00255at 60.142 kb on + strand, within IAI46_00255at 60.143 kb on - strand, within IAI46_00255

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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56,970 + IAI46_00245 0.74 -0.2
56,970 + IAI46_00245 0.74 +0.2
57,002 + IAI46_00245 0.76 +0.3
57,003 - IAI46_00245 0.76 -0.1
57,003 - IAI46_00245 0.76 -0.6
57,006 + IAI46_00245 0.76 +0.8
57,007 - IAI46_00245 0.76 +0.4
57,007 - IAI46_00245 0.76 -0.5
57,012 + IAI46_00245 0.77 +1.7
57,013 - IAI46_00245 0.77 -0.3
57,177 + IAI46_00245 0.86 +0.5
57,178 - IAI46_00245 0.86 -1.0
57,178 - IAI46_00245 0.86 -0.3
57,178 - IAI46_00245 0.86 +0.3
57,224 - IAI46_00245 0.88 +0.2
57,226 + IAI46_00245 0.88 -0.1
57,226 + IAI46_00245 0.88 +0.7
57,226 + IAI46_00245 0.88 +0.6
57,226 + IAI46_00245 0.88 -1.1
57,226 + IAI46_00245 0.88 -1.7
57,227 - IAI46_00245 0.88 +0.3
57,227 - IAI46_00245 0.88 -0.1
57,227 - IAI46_00245 0.88 +0.5
57,227 - IAI46_00245 0.88 -0.8
57,230 + IAI46_00245 0.89 +0.6
57,230 + IAI46_00245 0.89 -0.0
57,230 + IAI46_00245 0.89 +0.4
57,230 + IAI46_00245 0.89 +0.3
57,231 - IAI46_00245 0.89 +0.3
57,334 - -0.1
57,379 - -0.1
57,424 + -0.3
57,424 + +0.8
57,424 + +1.0
57,425 - +1.0
57,425 - +0.3
57,436 - +0.2
57,483 + +1.3
57,484 - -2.7
57,484 - -0.6
57,484 - -0.2
57,484 - -0.3
57,491 + -0.5
57,614 + -0.4
57,625 - -2.5
57,625 - +0.7
57,658 + -0.1
57,659 - -2.5
57,659 - -0.2
57,659 - -1.7
57,669 + +0.3
57,670 - +0.5
57,670 - -0.4
57,704 + -0.0
57,715 + -0.5
57,737 + +0.4
57,737 + +1.2
57,737 + +0.1
57,738 - -0.1
57,738 - +0.3
57,738 - +0.7
57,738 - +0.3
57,738 - -0.9
57,738 - +0.3
57,747 + +0.3
57,748 - +0.5
57,757 + -1.9
57,757 + +0.1
57,758 - +0.3
57,758 - +0.1
57,758 - +0.5
57,798 + +0.3
57,799 - +0.8
57,801 + +1.3
57,801 + +0.3
57,801 + +0.9
57,801 + -1.2
57,801 + -0.4
57,802 - -0.0
57,802 - -0.6
57,802 - -0.2
57,802 - +0.1
57,802 - -0.4
57,802 - +0.2
57,802 - -1.1
57,802 - +1.0
57,802 - -0.4
57,802 - -0.2
57,811 + +0.2
57,812 - -0.7
57,813 + -0.0
57,814 - -0.6
57,842 + +0.4
57,843 - -0.4
57,848 + +0.3
57,848 + +0.3
57,849 - +0.2
57,849 - -0.1
57,860 - -0.1
57,860 - +0.3
57,883 + -0.4
57,919 + -1.3
57,919 + -0.1
57,921 + +0.4
57,922 - +0.9
57,932 + -0.7
58,051 + IAI46_00250 0.11 +0.9
58,052 - IAI46_00250 0.11 -0.3
58,052 - IAI46_00250 0.11 -0.2
58,052 - IAI46_00250 0.11 -0.7
58,052 - IAI46_00250 0.11 -0.4
58,098 + IAI46_00250 0.14 +0.4
58,098 + IAI46_00250 0.14 +1.2
58,098 + IAI46_00250 0.14 +0.1
58,098 + IAI46_00250 0.14 -0.6
58,099 - IAI46_00250 0.15 +0.1
58,099 - IAI46_00250 0.15 +0.5
58,099 - IAI46_00250 0.15 -1.3
58,099 - IAI46_00250 0.15 +0.5
58,099 - IAI46_00250 0.15 +0.7
58,198 + IAI46_00250 0.22 +0.8
58,198 + IAI46_00250 0.22 +1.4
58,198 + IAI46_00250 0.22 +0.4
58,228 + IAI46_00250 0.25 -0.8
58,228 + IAI46_00250 0.25 -0.7
58,228 + IAI46_00250 0.25 -0.0
58,228 + IAI46_00250 0.25 -0.2
58,229 - IAI46_00250 0.25 -0.9
58,229 - IAI46_00250 0.25 -0.6
58,229 - IAI46_00250 0.25 +1.0
58,229 - IAI46_00250 0.25 +0.6
58,229 - IAI46_00250 0.25 +0.3
58,245 + IAI46_00250 0.26 -0.3
58,521 + IAI46_00250 0.48 -0.5
58,521 + IAI46_00250 0.48 -0.3
58,522 - IAI46_00250 0.48 -1.0
58,522 - IAI46_00250 0.48 -0.1
58,522 - IAI46_00250 0.48 +0.0
58,609 + IAI46_00250 0.55 +0.3
58,641 + IAI46_00250 0.58 -0.4
58,642 - IAI46_00250 0.58 +0.1
58,787 - IAI46_00250 0.70 -2.3
58,803 - IAI46_00250 0.71 -1.3
58,841 + IAI46_00250 0.74 -1.4
58,841 + IAI46_00250 0.74 -0.4
58,842 - IAI46_00250 0.74 -1.7
58,842 - IAI46_00250 0.74 +0.3
58,872 - IAI46_00250 0.76 +0.4
58,984 + IAI46_00250 0.85 +0.3
58,985 - IAI46_00250 0.85 +0.0
59,037 + IAI46_00250 0.90 +0.0
59,063 + +1.0
59,077 + +0.0
59,078 - +0.5
59,152 - -0.9
59,242 + +0.0
59,267 - -0.5
59,276 - +0.5
59,276 - -2.6
59,301 + -0.2
59,337 + -0.0
59,338 - -0.2
59,340 - +0.4
59,370 - -0.2
59,407 + +0.2
59,407 + -0.3
59,407 + +0.1
59,411 + -0.1
59,411 + +1.1
59,411 + -0.1
59,463 + +0.1
59,464 - +0.6
59,466 + -0.2
59,466 + +1.0
59,466 + -0.7
59,466 + -0.3
59,467 - -0.5
59,467 - +0.5
59,467 - +0.3
59,467 - +0.3
59,498 + IAI46_00255 0.11 -0.9
59,498 + IAI46_00255 0.11 -0.2
59,498 + IAI46_00255 0.11 -0.5
59,499 - IAI46_00255 0.11 +0.0
59,499 - IAI46_00255 0.11 -0.3
59,499 - IAI46_00255 0.11 +0.1
59,514 - IAI46_00255 0.13 -0.1
59,630 + IAI46_00255 0.25 -0.1
59,631 - IAI46_00255 0.25 +0.5
59,631 - IAI46_00255 0.25 +1.0
59,661 + IAI46_00255 0.28 +0.6
59,661 + IAI46_00255 0.28 -1.0
59,661 + IAI46_00255 0.28 -0.8
59,663 + IAI46_00255 0.28 -0.4
59,663 + IAI46_00255 0.28 -1.0
59,710 + IAI46_00255 0.33 +0.5
59,710 + IAI46_00255 0.33 +0.4
59,710 + IAI46_00255 0.33 -0.7
59,711 - IAI46_00255 0.33 -1.1
59,711 - IAI46_00255 0.33 +1.3
59,711 - IAI46_00255 0.33 -0.6
59,730 + IAI46_00255 0.35 -0.1
59,730 + IAI46_00255 0.35 +0.6
59,731 - IAI46_00255 0.35 +0.4
59,731 - IAI46_00255 0.35 +0.3
59,748 + IAI46_00255 0.37 -0.3
59,748 + IAI46_00255 0.37 +0.1
59,766 + IAI46_00255 0.38 -0.3
59,766 + IAI46_00255 0.38 -0.9
59,767 - IAI46_00255 0.38 -0.7
59,767 - IAI46_00255 0.38 +0.2
59,811 + IAI46_00255 0.43 +0.3
59,858 + IAI46_00255 0.48 -0.5
59,859 - IAI46_00255 0.48 -1.1
59,907 + IAI46_00255 0.53 -0.3
59,907 + IAI46_00255 0.53 -0.0
59,907 + IAI46_00255 0.53 -0.5
59,907 + IAI46_00255 0.53 -0.8
59,907 + IAI46_00255 0.53 +0.3
59,907 + IAI46_00255 0.53 -0.2
59,907 + IAI46_00255 0.53 +0.4
59,908 - IAI46_00255 0.53 +0.3
59,909 + IAI46_00255 0.53 -1.3
59,909 + IAI46_00255 0.53 +0.2
59,909 + IAI46_00255 0.53 +0.3
59,909 + IAI46_00255 0.53 +0.7
59,909 + IAI46_00255 0.53 +1.0
59,910 - IAI46_00255 0.53 -0.4
59,910 - IAI46_00255 0.53 +0.8
59,910 - IAI46_00255 0.53 +0.1
59,910 - IAI46_00255 0.53 +0.9
59,910 - IAI46_00255 0.53 -0.2
59,910 - IAI46_00255 0.53 +0.4
59,910 - IAI46_00255 0.53 -0.4
59,910 - IAI46_00255 0.53 +0.1
59,913 + IAI46_00255 0.53 -2.7
59,913 + IAI46_00255 0.53 -1.6
59,913 + IAI46_00255 0.53 -0.4
59,913 + IAI46_00255 0.53 +0.3
59,914 - IAI46_00255 0.53 +0.9
59,914 - IAI46_00255 0.53 -0.1
59,914 - IAI46_00255 0.53 +0.5
59,914 - IAI46_00255 0.53 +1.1
59,929 - IAI46_00255 0.55 -0.3
59,940 + IAI46_00255 0.56 -0.1
59,941 - IAI46_00255 0.56 -0.9
60,007 + IAI46_00255 0.63 +0.6
60,074 + IAI46_00255 0.69 -0.4
60,075 - IAI46_00255 0.69 +0.3
60,075 - IAI46_00255 0.69 +0.8
60,086 + IAI46_00255 0.71 -0.0
60,087 - IAI46_00255 0.71 -0.8
60,090 + IAI46_00255 0.71 +1.1
60,090 + IAI46_00255 0.71 -0.6
60,090 + IAI46_00255 0.71 +0.0
60,090 + IAI46_00255 0.71 +0.5
60,091 - IAI46_00255 0.71 -1.4
60,091 - IAI46_00255 0.71 +0.2
60,091 - IAI46_00255 0.71 -0.2
60,091 - IAI46_00255 0.71 +0.1
60,091 - IAI46_00255 0.71 -0.6
60,091 - IAI46_00255 0.71 -0.3
60,093 + IAI46_00255 0.71 +0.3
60,093 + IAI46_00255 0.71 -0.4
60,093 + IAI46_00255 0.71 -0.4
60,094 - IAI46_00255 0.71 +0.5
60,094 - IAI46_00255 0.71 -1.1
60,094 - IAI46_00255 0.71 -0.3
60,099 + IAI46_00255 0.72 +0.2
60,099 + IAI46_00255 0.72 -1.1
60,099 + IAI46_00255 0.72 +0.3
60,100 - IAI46_00255 0.72 -0.6
60,100 - IAI46_00255 0.72 +0.0
60,142 + IAI46_00255 0.76 -1.0
60,142 + IAI46_00255 0.76 -0.1
60,143 - IAI46_00255 0.76 +0.1

Or see this region's nucleotide sequence