Strain Fitness in Serratia liquefaciens MT49 around IAI46_23435

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_23420 and IAI46_23425 are separated by 18 nucleotidesIAI46_23425 and IAI46_23430 overlap by 4 nucleotidesIAI46_23430 and IAI46_23435 are separated by 10 nucleotidesIAI46_23435 and IAI46_23440 are separated by 32 nucleotidesIAI46_23440 and IAI46_23445 are separated by 385 nucleotides IAI46_23420: IAI46_23420 - 50S ribosomal protein L2, at 4,988,649 to 4,989,473 _23420 IAI46_23425: IAI46_23425 - 50S ribosomal protein L23, at 4,989,492 to 4,989,794 _23425 IAI46_23430: IAI46_23430 - 50S ribosomal protein L4, at 4,989,791 to 4,990,396 _23430 IAI46_23435: IAI46_23435 - 50S ribosomal protein L3, at 4,990,407 to 4,991,036 _23435 IAI46_23440: IAI46_23440 - 30S ribosomal protein S10, at 4,991,069 to 4,991,380 _23440 IAI46_23445: IAI46_23445 - bacterioferritin, at 4,991,766 to 4,992,230 _23445 Position (kb) 4990 4991 4992Strain fitness (log2 ratio) -2 -1 0 1at 4991.466 kb on - strandat 4991.466 kb on - strandat 4991.550 kb on - strandat 4991.550 kb on - strandat 4991.550 kb on - strandat 4991.550 kb on - strandat 4991.606 kb on + strandat 4991.606 kb on + strandat 4991.618 kb on - strandat 4991.644 kb on + strandat 4991.644 kb on + strandat 4991.645 kb on - strandat 4991.749 kb on + strandat 4991.749 kb on + strandat 4991.757 kb on - strandat 4991.760 kb on + strandat 4991.760 kb on + strandat 4991.761 kb on - strandat 4991.761 kb on - strandat 4991.761 kb on - strandat 4991.767 kb on + strandat 4991.767 kb on + strandat 4991.767 kb on + strandat 4991.786 kb on - strandat 4991.840 kb on + strand, within IAI46_23445at 4991.868 kb on + strand, within IAI46_23445at 4991.869 kb on - strand, within IAI46_23445at 4991.890 kb on + strand, within IAI46_23445at 4991.890 kb on + strand, within IAI46_23445at 4991.890 kb on + strand, within IAI46_23445at 4991.911 kb on + strand, within IAI46_23445at 4991.911 kb on + strand, within IAI46_23445at 4991.912 kb on - strand, within IAI46_23445at 4991.912 kb on - strand, within IAI46_23445

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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4,991,466 - -0.2
4,991,466 - +0.2
4,991,550 - -2.0
4,991,550 - +0.1
4,991,550 - +0.8
4,991,550 - -1.2
4,991,606 + +0.6
4,991,606 + +0.2
4,991,618 - -0.1
4,991,644 + +0.9
4,991,644 + +0.0
4,991,645 - +0.2
4,991,749 + -0.5
4,991,749 + +0.6
4,991,757 - +0.0
4,991,760 + -0.4
4,991,760 + +0.3
4,991,761 - +0.1
4,991,761 - -0.2
4,991,761 - +0.4
4,991,767 + +0.4
4,991,767 + -0.2
4,991,767 + +0.6
4,991,786 - -0.1
4,991,840 + IAI46_23445 0.16 +1.7
4,991,868 + IAI46_23445 0.22 -1.4
4,991,869 - IAI46_23445 0.22 -0.3
4,991,890 + IAI46_23445 0.27 -0.5
4,991,890 + IAI46_23445 0.27 -0.3
4,991,890 + IAI46_23445 0.27 -0.3
4,991,911 + IAI46_23445 0.31 +1.0
4,991,911 + IAI46_23445 0.31 +0.9
4,991,912 - IAI46_23445 0.31 +0.2
4,991,912 - IAI46_23445 0.31 -1.5

Or see this region's nucleotide sequence