Strain Fitness in Serratia liquefaciens MT49 around IAI46_22975

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_22970 and IAI46_22975 are separated by 204 nucleotidesIAI46_22975 and IAI46_22980 are separated by 42 nucleotidesIAI46_22980 and IAI46_22985 overlap by 4 nucleotides IAI46_22970: IAI46_22970 - tRNA dihydrouridine(20/20a) synthase DusA, at 4,898,788 to 4,899,798 _22970 IAI46_22975: IAI46_22975 - hypothetical protein, at 4,900,003 to 4,900,536 _22975 IAI46_22980: IAI46_22980 - RNA polymerase sigma factor, at 4,900,579 to 4,901,067 _22980 IAI46_22985: IAI46_22985 - anti-sigma factor, at 4,901,064 to 4,901,822 _22985 Position (kb) 4900 4901Strain fitness (log2 ratio) -2 -1 0 1 2at 4899.011 kb on - strand, within IAI46_22970at 4899.021 kb on + strand, within IAI46_22970at 4899.204 kb on - strand, within IAI46_22970at 4899.288 kb on + strand, within IAI46_22970at 4899.289 kb on - strand, within IAI46_22970at 4899.289 kb on - strand, within IAI46_22970at 4899.348 kb on - strand, within IAI46_22970at 4899.348 kb on - strand, within IAI46_22970at 4899.481 kb on + strand, within IAI46_22970at 4899.482 kb on - strand, within IAI46_22970at 4899.617 kb on + strand, within IAI46_22970at 4899.617 kb on + strand, within IAI46_22970at 4899.646 kb on - strand, within IAI46_22970at 4899.657 kb on + strand, within IAI46_22970at 4899.710 kb on + strandat 4899.711 kb on - strandat 4899.783 kb on + strandat 4899.784 kb on - strandat 4899.862 kb on + strandat 4899.865 kb on + strandat 4899.866 kb on - strandat 4899.866 kb on - strandat 4899.866 kb on - strandat 4899.868 kb on - strandat 4899.868 kb on - strandat 4899.934 kb on - strandat 4899.934 kb on - strandat 4899.962 kb on + strandat 4899.998 kb on + strandat 4899.998 kb on + strandat 4899.999 kb on - strandat 4900.130 kb on + strand, within IAI46_22975at 4900.132 kb on + strand, within IAI46_22975at 4900.132 kb on + strand, within IAI46_22975at 4900.132 kb on + strand, within IAI46_22975at 4900.132 kb on + strand, within IAI46_22975at 4900.133 kb on - strand, within IAI46_22975at 4900.133 kb on - strand, within IAI46_22975at 4900.133 kb on - strand, within IAI46_22975at 4900.137 kb on + strand, within IAI46_22975at 4900.137 kb on + strand, within IAI46_22975at 4900.138 kb on - strand, within IAI46_22975at 4900.165 kb on - strand, within IAI46_22975at 4900.165 kb on - strand, within IAI46_22975at 4900.201 kb on + strand, within IAI46_22975at 4900.201 kb on + strand, within IAI46_22975at 4900.201 kb on + strand, within IAI46_22975at 4900.201 kb on + strand, within IAI46_22975at 4900.201 kb on + strand, within IAI46_22975at 4900.201 kb on + strand, within IAI46_22975at 4900.202 kb on - strand, within IAI46_22975at 4900.202 kb on - strand, within IAI46_22975at 4900.202 kb on - strand, within IAI46_22975at 4900.202 kb on - strand, within IAI46_22975at 4900.202 kb on - strand, within IAI46_22975at 4900.202 kb on - strand, within IAI46_22975at 4900.207 kb on + strand, within IAI46_22975at 4900.207 kb on + strand, within IAI46_22975at 4900.207 kb on + strand, within IAI46_22975at 4900.208 kb on - strand, within IAI46_22975at 4900.352 kb on + strand, within IAI46_22975at 4900.353 kb on - strand, within IAI46_22975at 4900.397 kb on - strand, within IAI46_22975at 4900.412 kb on - strand, within IAI46_22975at 4900.412 kb on - strand, within IAI46_22975at 4900.412 kb on - strand, within IAI46_22975at 4900.412 kb on - strand, within IAI46_22975at 4900.412 kb on - strand, within IAI46_22975at 4900.412 kb on - strand, within IAI46_22975at 4900.413 kb on + strand, within IAI46_22975at 4900.413 kb on + strand, within IAI46_22975at 4900.413 kb on + strand, within IAI46_22975at 4900.413 kb on + strand, within IAI46_22975at 4900.413 kb on + strand, within IAI46_22975at 4900.414 kb on - strand, within IAI46_22975at 4900.414 kb on - strand, within IAI46_22975at 4900.452 kb on + strand, within IAI46_22975at 4900.452 kb on + strand, within IAI46_22975at 4900.453 kb on - strand, within IAI46_22975at 4900.453 kb on - strand, within IAI46_22975at 4900.458 kb on + strand, within IAI46_22975at 4900.458 kb on + strand, within IAI46_22975at 4900.535 kb on - strandat 4900.588 kb on + strandat 4900.588 kb on + strandat 4900.588 kb on + strandat 4900.589 kb on - strandat 4900.589 kb on - strandat 4900.589 kb on - strandat 4900.641 kb on - strand, within IAI46_22980at 4900.641 kb on - strand, within IAI46_22980at 4900.899 kb on + strand, within IAI46_22980at 4900.900 kb on - strand, within IAI46_22980at 4900.900 kb on - strand, within IAI46_22980at 4900.900 kb on - strand, within IAI46_22980at 4901.048 kb on + strandat 4901.048 kb on + strandat 4901.049 kb on - strandat 4901.077 kb on - strandat 4901.216 kb on + strand, within IAI46_22985at 4901.217 kb on - strand, within IAI46_22985at 4901.282 kb on + strand, within IAI46_22985at 4901.282 kb on + strand, within IAI46_22985at 4901.282 kb on + strand, within IAI46_22985at 4901.283 kb on - strand, within IAI46_22985at 4901.376 kb on + strand, within IAI46_22985at 4901.427 kb on + strand, within IAI46_22985at 4901.427 kb on + strand, within IAI46_22985at 4901.427 kb on + strand, within IAI46_22985at 4901.427 kb on + strand, within IAI46_22985at 4901.428 kb on - strand, within IAI46_22985at 4901.429 kb on + strand, within IAI46_22985at 4901.429 kb on + strand, within IAI46_22985at 4901.430 kb on - strand, within IAI46_22985at 4901.430 kb on - strand, within IAI46_22985at 4901.430 kb on - strand, within IAI46_22985at 4901.430 kb on - strand, within IAI46_22985at 4901.430 kb on - strand, within IAI46_22985at 4901.439 kb on + strand, within IAI46_22985at 4901.440 kb on - strand, within IAI46_22985at 4901.486 kb on + strand, within IAI46_22985at 4901.486 kb on + strand, within IAI46_22985at 4901.497 kb on + strand, within IAI46_22985at 4901.497 kb on + strand, within IAI46_22985at 4901.498 kb on - strand, within IAI46_22985

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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4,899,011 - IAI46_22970 0.22 -0.9
4,899,021 + IAI46_22970 0.23 +0.2
4,899,204 - IAI46_22970 0.41 -0.0
4,899,288 + IAI46_22970 0.49 +0.9
4,899,289 - IAI46_22970 0.50 -0.0
4,899,289 - IAI46_22970 0.50 -0.3
4,899,348 - IAI46_22970 0.55 +0.5
4,899,348 - IAI46_22970 0.55 -0.5
4,899,481 + IAI46_22970 0.69 +0.1
4,899,482 - IAI46_22970 0.69 -0.7
4,899,617 + IAI46_22970 0.82 +0.5
4,899,617 + IAI46_22970 0.82 -2.0
4,899,646 - IAI46_22970 0.85 +0.3
4,899,657 + IAI46_22970 0.86 +0.4
4,899,710 + -0.1
4,899,711 - +0.0
4,899,783 + -0.6
4,899,784 - +0.8
4,899,862 + +1.8
4,899,865 + +0.2
4,899,866 - +1.4
4,899,866 - +0.3
4,899,866 - -0.3
4,899,868 - +0.4
4,899,868 - +0.3
4,899,934 - +1.0
4,899,934 - -0.5
4,899,962 + +0.5
4,899,998 + +0.2
4,899,998 + +1.2
4,899,999 - -0.3
4,900,130 + IAI46_22975 0.24 -0.3
4,900,132 + IAI46_22975 0.24 +0.8
4,900,132 + IAI46_22975 0.24 -0.3
4,900,132 + IAI46_22975 0.24 -0.6
4,900,132 + IAI46_22975 0.24 +0.3
4,900,133 - IAI46_22975 0.24 -0.3
4,900,133 - IAI46_22975 0.24 -0.5
4,900,133 - IAI46_22975 0.24 -0.6
4,900,137 + IAI46_22975 0.25 +1.6
4,900,137 + IAI46_22975 0.25 -0.3
4,900,138 - IAI46_22975 0.25 +0.3
4,900,165 - IAI46_22975 0.30 +0.5
4,900,165 - IAI46_22975 0.30 +0.1
4,900,201 + IAI46_22975 0.37 +1.0
4,900,201 + IAI46_22975 0.37 -0.2
4,900,201 + IAI46_22975 0.37 +0.1
4,900,201 + IAI46_22975 0.37 +0.8
4,900,201 + IAI46_22975 0.37 -1.4
4,900,201 + IAI46_22975 0.37 -1.1
4,900,202 - IAI46_22975 0.37 -0.0
4,900,202 - IAI46_22975 0.37 -0.2
4,900,202 - IAI46_22975 0.37 +0.5
4,900,202 - IAI46_22975 0.37 +0.8
4,900,202 - IAI46_22975 0.37 -0.8
4,900,202 - IAI46_22975 0.37 +0.0
4,900,207 + IAI46_22975 0.38 -1.7
4,900,207 + IAI46_22975 0.38 -0.4
4,900,207 + IAI46_22975 0.38 -0.3
4,900,208 - IAI46_22975 0.38 -0.1
4,900,352 + IAI46_22975 0.65 +0.2
4,900,353 - IAI46_22975 0.66 -0.0
4,900,397 - IAI46_22975 0.74 +0.3
4,900,412 - IAI46_22975 0.77 +0.3
4,900,412 - IAI46_22975 0.77 -1.0
4,900,412 - IAI46_22975 0.77 +1.5
4,900,412 - IAI46_22975 0.77 +1.6
4,900,412 - IAI46_22975 0.77 -0.3
4,900,412 - IAI46_22975 0.77 +0.4
4,900,413 + IAI46_22975 0.77 -0.6
4,900,413 + IAI46_22975 0.77 +0.1
4,900,413 + IAI46_22975 0.77 -1.1
4,900,413 + IAI46_22975 0.77 +0.6
4,900,413 + IAI46_22975 0.77 -0.7
4,900,414 - IAI46_22975 0.77 +1.1
4,900,414 - IAI46_22975 0.77 +0.5
4,900,452 + IAI46_22975 0.84 +0.1
4,900,452 + IAI46_22975 0.84 -0.2
4,900,453 - IAI46_22975 0.84 +0.5
4,900,453 - IAI46_22975 0.84 +0.3
4,900,458 + IAI46_22975 0.85 +0.3
4,900,458 + IAI46_22975 0.85 +0.6
4,900,535 - +0.3
4,900,588 + -0.5
4,900,588 + +0.1
4,900,588 + -0.5
4,900,589 - -0.1
4,900,589 - -0.3
4,900,589 - +0.9
4,900,641 - IAI46_22980 0.13 +0.1
4,900,641 - IAI46_22980 0.13 +0.7
4,900,899 + IAI46_22980 0.65 +0.1
4,900,900 - IAI46_22980 0.66 +0.3
4,900,900 - IAI46_22980 0.66 +0.1
4,900,900 - IAI46_22980 0.66 +0.8
4,901,048 + +0.2
4,901,048 + -0.9
4,901,049 - +1.0
4,901,077 - +0.4
4,901,216 + IAI46_22985 0.20 +0.6
4,901,217 - IAI46_22985 0.20 +0.2
4,901,282 + IAI46_22985 0.29 +1.1
4,901,282 + IAI46_22985 0.29 +0.3
4,901,282 + IAI46_22985 0.29 -1.6
4,901,283 - IAI46_22985 0.29 +0.2
4,901,376 + IAI46_22985 0.41 +0.7
4,901,427 + IAI46_22985 0.48 +0.1
4,901,427 + IAI46_22985 0.48 +0.5
4,901,427 + IAI46_22985 0.48 -0.4
4,901,427 + IAI46_22985 0.48 +0.4
4,901,428 - IAI46_22985 0.48 +0.9
4,901,429 + IAI46_22985 0.48 -0.6
4,901,429 + IAI46_22985 0.48 +0.5
4,901,430 - IAI46_22985 0.48 +0.3
4,901,430 - IAI46_22985 0.48 +1.3
4,901,430 - IAI46_22985 0.48 -0.4
4,901,430 - IAI46_22985 0.48 +0.0
4,901,430 - IAI46_22985 0.48 +0.1
4,901,439 + IAI46_22985 0.49 -0.5
4,901,440 - IAI46_22985 0.50 +0.3
4,901,486 + IAI46_22985 0.56 -0.9
4,901,486 + IAI46_22985 0.56 +0.3
4,901,497 + IAI46_22985 0.57 +0.5
4,901,497 + IAI46_22985 0.57 +1.1
4,901,498 - IAI46_22985 0.57 -0.2

Or see this region's nucleotide sequence