Strain Fitness in Serratia liquefaciens MT49 around IAI46_21330

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_21325 and IAI46_21330 are separated by 165 nucleotidesIAI46_21330 and IAI46_21335 are separated by 633 nucleotides IAI46_21325: IAI46_21325 - pyruvate dehydrogenase (acetyl-transferring), homodimeric type, at 4,519,581 to 4,522,244 _21325 IAI46_21330: IAI46_21330 - pyruvate dehydrogenase complex transcriptional repressor PdhR, at 4,522,410 to 4,523,174 _21330 IAI46_21335: IAI46_21335 - amino acid permease, at 4,523,808 to 4,525,187 _21335 Position (kb) 4522 4523 4524Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4521.800 kb on - strand, within IAI46_21325at 4521.892 kb on + strand, within IAI46_21325at 4521.893 kb on - strand, within IAI46_21325at 4522.251 kb on - strandat 4522.335 kb on - strandat 4522.335 kb on - strandat 4522.346 kb on - strandat 4522.346 kb on - strandat 4522.353 kb on + strandat 4522.354 kb on - strandat 4522.358 kb on - strandat 4522.358 kb on - strandat 4522.412 kb on - strandat 4522.412 kb on - strandat 4522.666 kb on - strand, within IAI46_21330at 4522.717 kb on + strand, within IAI46_21330at 4522.718 kb on - strand, within IAI46_21330at 4522.838 kb on - strand, within IAI46_21330at 4522.838 kb on - strand, within IAI46_21330at 4523.215 kb on - strandat 4523.271 kb on - strandat 4523.308 kb on - strandat 4523.354 kb on + strandat 4523.354 kb on + strandat 4523.355 kb on - strandat 4523.355 kb on - strandat 4523.355 kb on - strandat 4523.355 kb on - strandat 4523.355 kb on - strandat 4523.357 kb on + strandat 4523.364 kb on + strandat 4523.365 kb on - strandat 4523.365 kb on - strandat 4523.451 kb on + strandat 4523.451 kb on + strandat 4523.452 kb on - strandat 4523.465 kb on + strandat 4523.465 kb on + strandat 4523.465 kb on + strandat 4523.465 kb on + strandat 4523.466 kb on - strandat 4523.469 kb on + strandat 4523.469 kb on + strandat 4523.470 kb on - strandat 4523.470 kb on - strandat 4523.470 kb on - strandat 4523.470 kb on - strandat 4523.482 kb on + strandat 4523.482 kb on + strandat 4523.537 kb on + strandat 4523.550 kb on + strandat 4523.551 kb on - strandat 4523.551 kb on - strandat 4523.566 kb on + strandat 4523.647 kb on + strandat 4523.648 kb on - strandat 4523.649 kb on + strandat 4523.650 kb on - strandat 4523.650 kb on - strandat 4523.674 kb on + strandat 4523.674 kb on + strandat 4523.675 kb on - strandat 4523.680 kb on + strandat 4523.714 kb on + strandat 4523.717 kb on + strandat 4523.718 kb on - strandat 4523.718 kb on - strandat 4523.721 kb on + strandat 4523.721 kb on + strandat 4523.721 kb on + strandat 4523.721 kb on + strandat 4523.722 kb on - strandat 4523.722 kb on - strandat 4523.723 kb on + strandat 4523.732 kb on - strandat 4523.754 kb on + strandat 4523.766 kb on + strandat 4523.870 kb on + strandat 4523.870 kb on + strandat 4523.870 kb on + strandat 4523.870 kb on + strandat 4523.870 kb on + strandat 4523.871 kb on - strandat 4523.871 kb on - strandat 4523.878 kb on + strandat 4523.903 kb on - strandat 4523.903 kb on - strandat 4524.013 kb on + strand, within IAI46_21335at 4524.056 kb on + strand, within IAI46_21335at 4524.056 kb on + strand, within IAI46_21335at 4524.060 kb on + strand, within IAI46_21335at 4524.060 kb on + strand, within IAI46_21335at 4524.060 kb on + strand, within IAI46_21335at 4524.061 kb on - strand, within IAI46_21335at 4524.099 kb on + strand, within IAI46_21335at 4524.099 kb on + strand, within IAI46_21335at 4524.111 kb on + strand, within IAI46_21335at 4524.111 kb on + strand, within IAI46_21335at 4524.111 kb on + strand, within IAI46_21335at 4524.111 kb on + strand, within IAI46_21335at 4524.112 kb on - strand, within IAI46_21335at 4524.112 kb on - strand, within IAI46_21335at 4524.112 kb on - strand, within IAI46_21335at 4524.112 kb on - strand, within IAI46_21335at 4524.112 kb on - strand, within IAI46_21335at 4524.112 kb on - strand, within IAI46_21335at 4524.115 kb on + strand, within IAI46_21335at 4524.115 kb on + strand, within IAI46_21335at 4524.115 kb on + strand, within IAI46_21335at 4524.115 kb on + strand, within IAI46_21335at 4524.115 kb on + strand, within IAI46_21335at 4524.116 kb on - strand, within IAI46_21335at 4524.116 kb on - strand, within IAI46_21335at 4524.116 kb on - strand, within IAI46_21335at 4524.116 kb on - strand, within IAI46_21335at 4524.149 kb on + strand, within IAI46_21335at 4524.153 kb on + strand, within IAI46_21335at 4524.153 kb on + strand, within IAI46_21335at 4524.153 kb on + strand, within IAI46_21335at 4524.153 kb on + strand, within IAI46_21335at 4524.153 kb on + strand, within IAI46_21335at 4524.153 kb on + strand, within IAI46_21335at 4524.154 kb on - strand, within IAI46_21335at 4524.154 kb on - strand, within IAI46_21335at 4524.154 kb on - strand, within IAI46_21335at 4524.154 kb on - strand, within IAI46_21335at 4524.154 kb on - strand, within IAI46_21335at 4524.154 kb on - strand, within IAI46_21335at 4524.154 kb on - strand, within IAI46_21335

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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4,521,800 - IAI46_21325 0.83 -0.1
4,521,892 + IAI46_21325 0.87 +0.7
4,521,893 - IAI46_21325 0.87 -1.3
4,522,251 - -0.1
4,522,335 - +0.1
4,522,335 - -0.1
4,522,346 - +0.8
4,522,346 - +0.2
4,522,353 + -0.4
4,522,354 - +1.2
4,522,358 - +0.5
4,522,358 - +0.7
4,522,412 - -0.2
4,522,412 - -0.3
4,522,666 - IAI46_21330 0.33 -0.3
4,522,717 + IAI46_21330 0.40 -0.1
4,522,718 - IAI46_21330 0.40 -0.1
4,522,838 - IAI46_21330 0.56 -0.5
4,522,838 - IAI46_21330 0.56 +0.2
4,523,215 - -0.1
4,523,271 - +0.5
4,523,308 - -0.9
4,523,354 + +0.4
4,523,354 + -0.1
4,523,355 - +0.1
4,523,355 - +0.2
4,523,355 - -2.1
4,523,355 - -1.3
4,523,355 - +0.1
4,523,357 + -0.0
4,523,364 + +0.1
4,523,365 - +0.8
4,523,365 - +0.2
4,523,451 + +0.4
4,523,451 + -0.1
4,523,452 - +0.2
4,523,465 + +0.2
4,523,465 + +1.0
4,523,465 + +0.6
4,523,465 + -0.1
4,523,466 - +0.4
4,523,469 + +0.4
4,523,469 + -0.4
4,523,470 - -0.1
4,523,470 - -0.1
4,523,470 - +0.4
4,523,470 - -0.4
4,523,482 + +2.9
4,523,482 + +0.2
4,523,537 + +0.3
4,523,550 + -1.1
4,523,551 - -0.3
4,523,551 - -1.1
4,523,566 + -0.8
4,523,647 + -1.7
4,523,648 - +0.1
4,523,649 + -1.7
4,523,650 - +0.0
4,523,650 - +0.1
4,523,674 + -0.6
4,523,674 + -0.1
4,523,675 - -0.0
4,523,680 + +0.4
4,523,714 + -1.1
4,523,717 + +0.4
4,523,718 - -0.3
4,523,718 - -0.6
4,523,721 + -1.1
4,523,721 + +0.1
4,523,721 + -2.0
4,523,721 + +0.5
4,523,722 - +0.1
4,523,722 - -1.4
4,523,723 + -1.7
4,523,732 - -0.4
4,523,754 + +1.0
4,523,766 + -0.5
4,523,870 + +0.3
4,523,870 + +0.7
4,523,870 + -0.7
4,523,870 + +0.3
4,523,870 + +1.4
4,523,871 - +1.6
4,523,871 - -0.6
4,523,878 + -0.6
4,523,903 - -0.7
4,523,903 - +1.9
4,524,013 + IAI46_21335 0.15 +0.2
4,524,056 + IAI46_21335 0.18 +0.3
4,524,056 + IAI46_21335 0.18 -0.7
4,524,060 + IAI46_21335 0.18 -0.2
4,524,060 + IAI46_21335 0.18 +0.4
4,524,060 + IAI46_21335 0.18 -0.9
4,524,061 - IAI46_21335 0.18 -1.8
4,524,099 + IAI46_21335 0.21 +1.2
4,524,099 + IAI46_21335 0.21 -0.5
4,524,111 + IAI46_21335 0.22 +0.3
4,524,111 + IAI46_21335 0.22 +1.2
4,524,111 + IAI46_21335 0.22 -0.9
4,524,111 + IAI46_21335 0.22 +0.5
4,524,112 - IAI46_21335 0.22 +0.6
4,524,112 - IAI46_21335 0.22 -0.1
4,524,112 - IAI46_21335 0.22 +0.3
4,524,112 - IAI46_21335 0.22 +0.8
4,524,112 - IAI46_21335 0.22 -0.6
4,524,112 - IAI46_21335 0.22 -0.9
4,524,115 + IAI46_21335 0.22 +1.3
4,524,115 + IAI46_21335 0.22 -1.4
4,524,115 + IAI46_21335 0.22 +0.3
4,524,115 + IAI46_21335 0.22 +0.8
4,524,115 + IAI46_21335 0.22 +0.0
4,524,116 - IAI46_21335 0.22 +0.3
4,524,116 - IAI46_21335 0.22 +0.6
4,524,116 - IAI46_21335 0.22 +0.9
4,524,116 - IAI46_21335 0.22 +1.1
4,524,149 + IAI46_21335 0.25 +0.4
4,524,153 + IAI46_21335 0.25 +0.1
4,524,153 + IAI46_21335 0.25 -0.4
4,524,153 + IAI46_21335 0.25 -0.2
4,524,153 + IAI46_21335 0.25 +0.1
4,524,153 + IAI46_21335 0.25 -0.3
4,524,153 + IAI46_21335 0.25 +0.9
4,524,154 - IAI46_21335 0.25 +0.1
4,524,154 - IAI46_21335 0.25 +0.8
4,524,154 - IAI46_21335 0.25 +0.5
4,524,154 - IAI46_21335 0.25 -0.2
4,524,154 - IAI46_21335 0.25 -0.1
4,524,154 - IAI46_21335 0.25 +0.4
4,524,154 - IAI46_21335 0.25 +0.8

Or see this region's nucleotide sequence