Strain Fitness in Serratia liquefaciens MT49 around IAI46_21030

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_21025 and IAI46_21030 are separated by 2 nucleotidesIAI46_21030 and IAI46_21035 overlap by 8 nucleotides IAI46_21025: IAI46_21025 - tartrate dehydrogenase, at 4,450,349 to 4,451,428 _21025 IAI46_21030: IAI46_21030 - ABC transporter ATP-binding protein, at 4,451,431 to 4,452,501 _21030 IAI46_21035: IAI46_21035 - iron ABC transporter permease, at 4,452,494 to 4,454,263 _21035 Position (kb) 4451 4452 4453Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4450.497 kb on - strand, within IAI46_21025at 4450.499 kb on + strand, within IAI46_21025at 4450.499 kb on + strand, within IAI46_21025at 4450.500 kb on - strand, within IAI46_21025at 4450.545 kb on + strand, within IAI46_21025at 4450.545 kb on + strand, within IAI46_21025at 4450.545 kb on + strand, within IAI46_21025at 4450.546 kb on - strand, within IAI46_21025at 4450.546 kb on - strand, within IAI46_21025at 4450.566 kb on - strand, within IAI46_21025at 4450.566 kb on - strand, within IAI46_21025at 4450.606 kb on + strand, within IAI46_21025at 4450.606 kb on + strand, within IAI46_21025at 4450.655 kb on + strand, within IAI46_21025at 4450.656 kb on - strand, within IAI46_21025at 4450.711 kb on + strand, within IAI46_21025at 4450.711 kb on + strand, within IAI46_21025at 4450.711 kb on + strand, within IAI46_21025at 4450.711 kb on + strand, within IAI46_21025at 4450.712 kb on - strand, within IAI46_21025at 4450.712 kb on - strand, within IAI46_21025at 4450.766 kb on + strand, within IAI46_21025at 4450.766 kb on + strand, within IAI46_21025at 4450.766 kb on + strand, within IAI46_21025at 4450.767 kb on - strand, within IAI46_21025at 4450.865 kb on + strand, within IAI46_21025at 4450.865 kb on + strand, within IAI46_21025at 4450.949 kb on + strand, within IAI46_21025at 4451.014 kb on + strand, within IAI46_21025at 4451.014 kb on + strand, within IAI46_21025at 4451.014 kb on + strand, within IAI46_21025at 4451.015 kb on - strand, within IAI46_21025at 4451.015 kb on - strand, within IAI46_21025at 4451.016 kb on + strand, within IAI46_21025at 4451.021 kb on - strand, within IAI46_21025at 4451.021 kb on - strand, within IAI46_21025at 4451.021 kb on - strand, within IAI46_21025at 4451.024 kb on - strand, within IAI46_21025at 4451.284 kb on + strand, within IAI46_21025at 4451.321 kb on - strandat 4451.362 kb on + strandat 4451.510 kb on + strandat 4451.510 kb on + strandat 4451.553 kb on - strand, within IAI46_21030at 4451.573 kb on + strand, within IAI46_21030at 4451.573 kb on + strand, within IAI46_21030at 4451.573 kb on + strand, within IAI46_21030at 4451.573 kb on + strand, within IAI46_21030at 4451.573 kb on + strand, within IAI46_21030at 4451.573 kb on + strand, within IAI46_21030at 4451.574 kb on - strand, within IAI46_21030at 4451.574 kb on - strand, within IAI46_21030at 4451.574 kb on - strand, within IAI46_21030at 4451.574 kb on - strand, within IAI46_21030at 4451.772 kb on + strand, within IAI46_21030at 4451.772 kb on + strand, within IAI46_21030at 4451.819 kb on + strand, within IAI46_21030at 4451.819 kb on + strand, within IAI46_21030at 4451.820 kb on - strand, within IAI46_21030at 4451.820 kb on - strand, within IAI46_21030at 4451.820 kb on - strand, within IAI46_21030at 4452.002 kb on - strand, within IAI46_21030at 4452.035 kb on + strand, within IAI46_21030at 4452.035 kb on + strand, within IAI46_21030at 4452.035 kb on + strand, within IAI46_21030at 4452.036 kb on - strand, within IAI46_21030at 4452.179 kb on - strand, within IAI46_21030at 4452.233 kb on + strand, within IAI46_21030at 4452.233 kb on + strand, within IAI46_21030at 4452.234 kb on - strand, within IAI46_21030at 4452.234 kb on - strand, within IAI46_21030at 4452.234 kb on - strand, within IAI46_21030at 4452.244 kb on + strand, within IAI46_21030at 4452.245 kb on - strand, within IAI46_21030at 4452.299 kb on + strand, within IAI46_21030at 4452.299 kb on + strand, within IAI46_21030at 4452.299 kb on + strand, within IAI46_21030at 4452.299 kb on + strand, within IAI46_21030at 4452.299 kb on + strand, within IAI46_21030at 4452.300 kb on - strand, within IAI46_21030at 4452.306 kb on + strand, within IAI46_21030at 4452.307 kb on - strand, within IAI46_21030at 4452.307 kb on - strand, within IAI46_21030at 4452.321 kb on + strand, within IAI46_21030at 4452.322 kb on - strand, within IAI46_21030at 4452.424 kb on + strandat 4452.424 kb on + strandat 4452.504 kb on - strandat 4452.504 kb on - strandat 4452.560 kb on - strandat 4452.560 kb on - strandat 4452.560 kb on - strandat 4452.560 kb on - strandat 4452.626 kb on + strandat 4452.627 kb on - strandat 4452.654 kb on + strandat 4452.669 kb on + strandat 4452.669 kb on + strandat 4452.670 kb on - strandat 4452.736 kb on + strand, within IAI46_21035at 4452.813 kb on - strand, within IAI46_21035at 4452.864 kb on + strand, within IAI46_21035at 4452.864 kb on + strand, within IAI46_21035at 4452.865 kb on - strand, within IAI46_21035at 4453.068 kb on + strand, within IAI46_21035at 4453.128 kb on + strand, within IAI46_21035at 4453.129 kb on - strand, within IAI46_21035at 4453.136 kb on + strand, within IAI46_21035at 4453.225 kb on + strand, within IAI46_21035at 4453.225 kb on + strand, within IAI46_21035at 4453.250 kb on - strand, within IAI46_21035at 4453.273 kb on - strand, within IAI46_21035at 4453.276 kb on + strand, within IAI46_21035at 4453.277 kb on - strand, within IAI46_21035at 4453.313 kb on + strand, within IAI46_21035at 4453.313 kb on + strand, within IAI46_21035at 4453.313 kb on + strand, within IAI46_21035at 4453.313 kb on + strand, within IAI46_21035at 4453.314 kb on - strand, within IAI46_21035at 4453.314 kb on - strand, within IAI46_21035

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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4,450,497 - IAI46_21025 0.14 -0.1
4,450,499 + IAI46_21025 0.14 +0.4
4,450,499 + IAI46_21025 0.14 +0.9
4,450,500 - IAI46_21025 0.14 +0.1
4,450,545 + IAI46_21025 0.18 -0.6
4,450,545 + IAI46_21025 0.18 -0.2
4,450,545 + IAI46_21025 0.18 +0.0
4,450,546 - IAI46_21025 0.18 +0.1
4,450,546 - IAI46_21025 0.18 +2.3
4,450,566 - IAI46_21025 0.20 -0.3
4,450,566 - IAI46_21025 0.20 +1.1
4,450,606 + IAI46_21025 0.24 +0.4
4,450,606 + IAI46_21025 0.24 -0.7
4,450,655 + IAI46_21025 0.28 -0.6
4,450,656 - IAI46_21025 0.28 +0.1
4,450,711 + IAI46_21025 0.34 +0.5
4,450,711 + IAI46_21025 0.34 -0.0
4,450,711 + IAI46_21025 0.34 -0.7
4,450,711 + IAI46_21025 0.34 -0.3
4,450,712 - IAI46_21025 0.34 -0.5
4,450,712 - IAI46_21025 0.34 +0.4
4,450,766 + IAI46_21025 0.39 +0.2
4,450,766 + IAI46_21025 0.39 +0.7
4,450,766 + IAI46_21025 0.39 -0.3
4,450,767 - IAI46_21025 0.39 +2.0
4,450,865 + IAI46_21025 0.48 +0.2
4,450,865 + IAI46_21025 0.48 +0.1
4,450,949 + IAI46_21025 0.56 -0.4
4,451,014 + IAI46_21025 0.62 -0.1
4,451,014 + IAI46_21025 0.62 +0.1
4,451,014 + IAI46_21025 0.62 +0.7
4,451,015 - IAI46_21025 0.62 +0.7
4,451,015 - IAI46_21025 0.62 +0.8
4,451,016 + IAI46_21025 0.62 +1.1
4,451,021 - IAI46_21025 0.62 +0.3
4,451,021 - IAI46_21025 0.62 -0.1
4,451,021 - IAI46_21025 0.62 -0.0
4,451,024 - IAI46_21025 0.62 -0.1
4,451,284 + IAI46_21025 0.87 +0.3
4,451,321 - -0.2
4,451,362 + -0.9
4,451,510 + +0.8
4,451,510 + +0.7
4,451,553 - IAI46_21030 0.11 -0.4
4,451,573 + IAI46_21030 0.13 +0.3
4,451,573 + IAI46_21030 0.13 -0.1
4,451,573 + IAI46_21030 0.13 -1.5
4,451,573 + IAI46_21030 0.13 -0.4
4,451,573 + IAI46_21030 0.13 +0.2
4,451,573 + IAI46_21030 0.13 +0.3
4,451,574 - IAI46_21030 0.13 +0.1
4,451,574 - IAI46_21030 0.13 -0.8
4,451,574 - IAI46_21030 0.13 -0.3
4,451,574 - IAI46_21030 0.13 -0.8
4,451,772 + IAI46_21030 0.32 +0.3
4,451,772 + IAI46_21030 0.32 +0.3
4,451,819 + IAI46_21030 0.36 +0.8
4,451,819 + IAI46_21030 0.36 +0.2
4,451,820 - IAI46_21030 0.36 +1.6
4,451,820 - IAI46_21030 0.36 +0.0
4,451,820 - IAI46_21030 0.36 -0.6
4,452,002 - IAI46_21030 0.53 -1.4
4,452,035 + IAI46_21030 0.56 -0.4
4,452,035 + IAI46_21030 0.56 +0.3
4,452,035 + IAI46_21030 0.56 +0.2
4,452,036 - IAI46_21030 0.56 +0.9
4,452,179 - IAI46_21030 0.70 +0.8
4,452,233 + IAI46_21030 0.75 -0.4
4,452,233 + IAI46_21030 0.75 -0.4
4,452,234 - IAI46_21030 0.75 -0.3
4,452,234 - IAI46_21030 0.75 -0.3
4,452,234 - IAI46_21030 0.75 +0.4
4,452,244 + IAI46_21030 0.76 +0.7
4,452,245 - IAI46_21030 0.76 -0.3
4,452,299 + IAI46_21030 0.81 +0.3
4,452,299 + IAI46_21030 0.81 +0.1
4,452,299 + IAI46_21030 0.81 -1.9
4,452,299 + IAI46_21030 0.81 +0.4
4,452,299 + IAI46_21030 0.81 -0.1
4,452,300 - IAI46_21030 0.81 +0.5
4,452,306 + IAI46_21030 0.82 +0.0
4,452,307 - IAI46_21030 0.82 +0.3
4,452,307 - IAI46_21030 0.82 -0.2
4,452,321 + IAI46_21030 0.83 +0.6
4,452,322 - IAI46_21030 0.83 +0.9
4,452,424 + +1.2
4,452,424 + -0.2
4,452,504 - -1.8
4,452,504 - +0.2
4,452,560 - -1.2
4,452,560 - -0.9
4,452,560 - +0.7
4,452,560 - +0.2
4,452,626 + +0.0
4,452,627 - -0.1
4,452,654 + +0.7
4,452,669 + -0.7
4,452,669 + +0.0
4,452,670 - +0.2
4,452,736 + IAI46_21035 0.14 -0.2
4,452,813 - IAI46_21035 0.18 +0.2
4,452,864 + IAI46_21035 0.21 -0.4
4,452,864 + IAI46_21035 0.21 +0.3
4,452,865 - IAI46_21035 0.21 +0.6
4,453,068 + IAI46_21035 0.32 -2.4
4,453,128 + IAI46_21035 0.36 -0.3
4,453,129 - IAI46_21035 0.36 +1.1
4,453,136 + IAI46_21035 0.36 -0.1
4,453,225 + IAI46_21035 0.41 +0.2
4,453,225 + IAI46_21035 0.41 +0.1
4,453,250 - IAI46_21035 0.43 -3.2
4,453,273 - IAI46_21035 0.44 -0.2
4,453,276 + IAI46_21035 0.44 +0.2
4,453,277 - IAI46_21035 0.44 -0.0
4,453,313 + IAI46_21035 0.46 -0.3
4,453,313 + IAI46_21035 0.46 -0.2
4,453,313 + IAI46_21035 0.46 -0.7
4,453,313 + IAI46_21035 0.46 +0.6
4,453,314 - IAI46_21035 0.46 +0.3
4,453,314 - IAI46_21035 0.46 -1.0

Or see this region's nucleotide sequence