Strain Fitness in Serratia liquefaciens MT49 around IAI46_20845

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_20840 and IAI46_20845 are separated by 135 nucleotidesIAI46_20845 and IAI46_20850 are separated by 240 nucleotides IAI46_20840: IAI46_20840 - zinc-binding alcohol dehydrogenase family protein, at 4,407,513 to 4,408,478 _20840 IAI46_20845: IAI46_20845 - autotransporter outer membrane beta-barrel domain-containing protein, at 4,408,614 to 4,411,898 _20845 IAI46_20850: IAI46_20850 - aminomethyl-transferring glycine dehydrogenase, at 4,412,139 to 4,415,018 _20850 Position (kb) 4408 4409 4410 4411 4412Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4407.653 kb on - strand, within IAI46_20840at 4407.653 kb on - strand, within IAI46_20840at 4407.708 kb on + strand, within IAI46_20840at 4407.717 kb on - strand, within IAI46_20840at 4407.783 kb on + strand, within IAI46_20840at 4407.784 kb on - strand, within IAI46_20840at 4407.784 kb on - strand, within IAI46_20840at 4407.803 kb on - strand, within IAI46_20840at 4407.824 kb on + strand, within IAI46_20840at 4407.825 kb on - strand, within IAI46_20840at 4407.863 kb on + strand, within IAI46_20840at 4407.863 kb on + strand, within IAI46_20840at 4407.864 kb on - strand, within IAI46_20840at 4407.866 kb on - strand, within IAI46_20840at 4407.866 kb on - strand, within IAI46_20840at 4407.866 kb on - strand, within IAI46_20840at 4407.883 kb on + strand, within IAI46_20840at 4407.884 kb on - strand, within IAI46_20840at 4407.953 kb on + strand, within IAI46_20840at 4407.953 kb on + strand, within IAI46_20840at 4407.954 kb on - strand, within IAI46_20840at 4407.954 kb on - strand, within IAI46_20840at 4408.049 kb on + strand, within IAI46_20840at 4408.050 kb on - strand, within IAI46_20840at 4408.211 kb on + strand, within IAI46_20840at 4408.211 kb on + strand, within IAI46_20840at 4408.212 kb on - strand, within IAI46_20840at 4408.330 kb on + strand, within IAI46_20840at 4408.331 kb on - strand, within IAI46_20840at 4408.347 kb on + strand, within IAI46_20840at 4408.348 kb on - strand, within IAI46_20840at 4408.452 kb on + strandat 4408.462 kb on - strandat 4408.516 kb on + strandat 4408.555 kb on + strandat 4408.556 kb on - strandat 4408.556 kb on - strandat 4408.556 kb on - strandat 4408.558 kb on + strandat 4408.559 kb on - strandat 4408.559 kb on - strandat 4408.559 kb on - strandat 4408.559 kb on - strandat 4408.565 kb on - strandat 4408.578 kb on + strandat 4408.609 kb on - strandat 4408.648 kb on - strandat 4408.648 kb on - strandat 4408.721 kb on - strandat 4408.748 kb on + strandat 4408.793 kb on + strandat 4408.794 kb on - strandat 4408.794 kb on - strandat 4408.795 kb on + strandat 4408.795 kb on + strandat 4408.796 kb on - strandat 4408.796 kb on - strandat 4408.903 kb on + strandat 4408.925 kb on + strandat 4408.955 kb on + strand, within IAI46_20845at 4409.017 kb on + strand, within IAI46_20845at 4409.018 kb on - strand, within IAI46_20845at 4409.051 kb on + strand, within IAI46_20845at 4409.065 kb on + strand, within IAI46_20845at 4409.065 kb on + strand, within IAI46_20845at 4409.066 kb on - strand, within IAI46_20845at 4409.066 kb on - strand, within IAI46_20845at 4409.072 kb on - strand, within IAI46_20845at 4409.168 kb on + strand, within IAI46_20845at 4409.198 kb on - strand, within IAI46_20845at 4409.230 kb on + strand, within IAI46_20845at 4409.270 kb on + strand, within IAI46_20845at 4409.270 kb on + strand, within IAI46_20845at 4409.270 kb on + strand, within IAI46_20845at 4409.358 kb on - strand, within IAI46_20845at 4409.423 kb on + strand, within IAI46_20845at 4409.573 kb on + strand, within IAI46_20845at 4409.574 kb on - strand, within IAI46_20845at 4409.575 kb on + strand, within IAI46_20845at 4409.576 kb on - strand, within IAI46_20845at 4409.695 kb on - strand, within IAI46_20845at 4409.885 kb on + strand, within IAI46_20845at 4409.886 kb on - strand, within IAI46_20845at 4409.912 kb on - strand, within IAI46_20845at 4409.961 kb on - strand, within IAI46_20845at 4410.037 kb on + strand, within IAI46_20845at 4410.084 kb on + strand, within IAI46_20845at 4410.084 kb on + strand, within IAI46_20845at 4410.085 kb on - strand, within IAI46_20845at 4410.172 kb on + strand, within IAI46_20845at 4410.172 kb on + strand, within IAI46_20845at 4410.173 kb on - strand, within IAI46_20845at 4410.173 kb on - strand, within IAI46_20845at 4410.173 kb on - strand, within IAI46_20845at 4410.256 kb on + strand, within IAI46_20845at 4410.256 kb on + strand, within IAI46_20845at 4410.256 kb on + strand, within IAI46_20845at 4410.256 kb on + strand, within IAI46_20845at 4410.257 kb on - strand, within IAI46_20845at 4410.350 kb on + strand, within IAI46_20845at 4410.381 kb on + strand, within IAI46_20845at 4410.382 kb on - strand, within IAI46_20845at 4410.449 kb on - strand, within IAI46_20845at 4410.551 kb on + strand, within IAI46_20845at 4410.657 kb on - strand, within IAI46_20845at 4410.668 kb on + strand, within IAI46_20845at 4410.669 kb on - strand, within IAI46_20845at 4410.676 kb on + strand, within IAI46_20845at 4410.687 kb on + strand, within IAI46_20845at 4410.701 kb on - strand, within IAI46_20845at 4410.738 kb on - strand, within IAI46_20845at 4410.746 kb on + strand, within IAI46_20845at 4410.825 kb on - strand, within IAI46_20845at 4410.828 kb on - strand, within IAI46_20845at 4410.828 kb on - strand, within IAI46_20845at 4410.836 kb on - strand, within IAI46_20845at 4410.886 kb on + strand, within IAI46_20845at 4410.886 kb on + strand, within IAI46_20845at 4410.887 kb on - strand, within IAI46_20845at 4410.887 kb on - strand, within IAI46_20845at 4410.894 kb on - strand, within IAI46_20845at 4410.916 kb on + strand, within IAI46_20845at 4410.916 kb on + strand, within IAI46_20845at 4410.975 kb on - strand, within IAI46_20845at 4410.975 kb on - strand, within IAI46_20845at 4411.032 kb on + strand, within IAI46_20845at 4411.033 kb on - strand, within IAI46_20845at 4411.033 kb on - strand, within IAI46_20845at 4411.048 kb on + strand, within IAI46_20845at 4411.049 kb on - strand, within IAI46_20845at 4411.096 kb on + strand, within IAI46_20845at 4411.096 kb on + strand, within IAI46_20845at 4411.096 kb on + strand, within IAI46_20845at 4411.096 kb on + strand, within IAI46_20845at 4411.096 kb on + strand, within IAI46_20845at 4411.096 kb on + strand, within IAI46_20845at 4411.096 kb on + strand, within IAI46_20845at 4411.097 kb on - strand, within IAI46_20845at 4411.097 kb on - strand, within IAI46_20845at 4411.097 kb on - strand, within IAI46_20845at 4411.097 kb on - strand, within IAI46_20845at 4411.097 kb on - strand, within IAI46_20845at 4411.097 kb on - strand, within IAI46_20845at 4411.097 kb on - strand, within IAI46_20845at 4411.097 kb on - strand, within IAI46_20845at 4411.097 kb on - strand, within IAI46_20845at 4411.097 kb on - strand, within IAI46_20845at 4411.097 kb on - strand, within IAI46_20845at 4411.097 kb on - strand, within IAI46_20845at 4411.097 kb on - strand, within IAI46_20845at 4411.131 kb on - strand, within IAI46_20845at 4411.131 kb on - strand, within IAI46_20845at 4411.210 kb on - strand, within IAI46_20845at 4411.247 kb on + strand, within IAI46_20845at 4411.247 kb on + strand, within IAI46_20845at 4411.248 kb on - strand, within IAI46_20845at 4411.248 kb on - strand, within IAI46_20845at 4411.248 kb on - strand, within IAI46_20845at 4411.248 kb on - strand, within IAI46_20845at 4411.250 kb on + strand, within IAI46_20845at 4411.250 kb on + strand, within IAI46_20845at 4411.250 kb on + strand, within IAI46_20845at 4411.251 kb on - strand, within IAI46_20845at 4411.251 kb on - strand, within IAI46_20845at 4411.377 kb on + strand, within IAI46_20845at 4411.378 kb on - strand, within IAI46_20845at 4411.389 kb on + strand, within IAI46_20845at 4411.389 kb on + strand, within IAI46_20845at 4411.390 kb on - strand, within IAI46_20845at 4411.632 kb on + strandat 4411.633 kb on - strandat 4411.664 kb on + strandat 4411.664 kb on + strandat 4411.664 kb on + strandat 4411.664 kb on + strandat 4411.665 kb on - strandat 4411.668 kb on - strandat 4411.762 kb on + strandat 4411.831 kb on + strandat 4411.831 kb on + strandat 4411.831 kb on + strandat 4411.864 kb on - strandat 4411.917 kb on - strandat 4412.052 kb on + strandat 4412.134 kb on + strandat 4412.141 kb on - strandat 4412.146 kb on + strandat 4412.181 kb on - strandat 4412.224 kb on + strandat 4412.224 kb on + strandat 4412.239 kb on - strandat 4412.275 kb on + strandat 4412.337 kb on - strandat 4412.573 kb on + strand, within IAI46_20850at 4412.574 kb on - strand, within IAI46_20850at 4412.607 kb on - strand, within IAI46_20850at 4412.608 kb on + strand, within IAI46_20850at 4412.608 kb on + strand, within IAI46_20850at 4412.608 kb on + strand, within IAI46_20850at 4412.608 kb on + strand, within IAI46_20850at 4412.609 kb on - strand, within IAI46_20850at 4412.609 kb on - strand, within IAI46_20850at 4412.621 kb on - strand, within IAI46_20850at 4412.645 kb on + strand, within IAI46_20850at 4412.647 kb on + strand, within IAI46_20850at 4412.647 kb on + strand, within IAI46_20850at 4412.647 kb on + strand, within IAI46_20850at 4412.648 kb on - strand, within IAI46_20850at 4412.658 kb on - strand, within IAI46_20850at 4412.713 kb on + strand, within IAI46_20850at 4412.713 kb on + strand, within IAI46_20850at 4412.713 kb on + strand, within IAI46_20850at 4412.713 kb on + strand, within IAI46_20850at 4412.713 kb on + strand, within IAI46_20850at 4412.713 kb on + strand, within IAI46_20850at 4412.713 kb on + strand, within IAI46_20850at 4412.713 kb on + strand, within IAI46_20850at 4412.714 kb on - strand, within IAI46_20850at 4412.714 kb on - strand, within IAI46_20850at 4412.714 kb on - strand, within IAI46_20850at 4412.714 kb on - strand, within IAI46_20850at 4412.714 kb on - strand, within IAI46_20850at 4412.714 kb on - strand, within IAI46_20850at 4412.735 kb on + strand, within IAI46_20850at 4412.736 kb on - strand, within IAI46_20850at 4412.785 kb on - strand, within IAI46_20850at 4412.785 kb on - strand, within IAI46_20850at 4412.885 kb on + strand, within IAI46_20850at 4412.885 kb on + strand, within IAI46_20850at 4412.897 kb on + strand, within IAI46_20850at 4412.898 kb on - strand, within IAI46_20850at 4412.898 kb on - strand, within IAI46_20850at 4412.898 kb on - strand, within IAI46_20850

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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4,407,653 - IAI46_20840 0.14 -0.0
4,407,653 - IAI46_20840 0.14 -0.7
4,407,708 + IAI46_20840 0.20 +0.3
4,407,717 - IAI46_20840 0.21 -1.5
4,407,783 + IAI46_20840 0.28 +0.3
4,407,784 - IAI46_20840 0.28 +0.6
4,407,784 - IAI46_20840 0.28 +1.1
4,407,803 - IAI46_20840 0.30 -0.5
4,407,824 + IAI46_20840 0.32 +1.1
4,407,825 - IAI46_20840 0.32 -0.3
4,407,863 + IAI46_20840 0.36 -0.5
4,407,863 + IAI46_20840 0.36 -0.1
4,407,864 - IAI46_20840 0.36 -0.3
4,407,866 - IAI46_20840 0.37 +0.3
4,407,866 - IAI46_20840 0.37 -0.6
4,407,866 - IAI46_20840 0.37 -0.1
4,407,883 + IAI46_20840 0.38 +0.0
4,407,884 - IAI46_20840 0.38 -1.6
4,407,953 + IAI46_20840 0.46 +0.3
4,407,953 + IAI46_20840 0.46 +0.9
4,407,954 - IAI46_20840 0.46 +0.4
4,407,954 - IAI46_20840 0.46 +2.3
4,408,049 + IAI46_20840 0.55 -0.7
4,408,050 - IAI46_20840 0.56 +0.4
4,408,211 + IAI46_20840 0.72 +0.2
4,408,211 + IAI46_20840 0.72 -0.5
4,408,212 - IAI46_20840 0.72 +0.1
4,408,330 + IAI46_20840 0.85 -0.8
4,408,331 - IAI46_20840 0.85 +0.2
4,408,347 + IAI46_20840 0.86 -2.8
4,408,348 - IAI46_20840 0.86 -0.3
4,408,452 + +0.7
4,408,462 - -0.9
4,408,516 + -0.2
4,408,555 + -0.2
4,408,556 - +0.5
4,408,556 - +0.1
4,408,556 - +0.1
4,408,558 + -0.1
4,408,559 - -0.5
4,408,559 - +0.3
4,408,559 - -0.5
4,408,559 - -0.9
4,408,565 - +0.2
4,408,578 + +0.0
4,408,609 - +0.4
4,408,648 - -0.6
4,408,648 - +0.4
4,408,721 - -0.2
4,408,748 + -0.1
4,408,793 + +0.1
4,408,794 - +0.2
4,408,794 - -0.0
4,408,795 + -0.1
4,408,795 + +0.0
4,408,796 - +0.2
4,408,796 - -0.6
4,408,903 + +0.2
4,408,925 + -0.1
4,408,955 + IAI46_20845 0.10 +1.2
4,409,017 + IAI46_20845 0.12 +0.1
4,409,018 - IAI46_20845 0.12 -0.3
4,409,051 + IAI46_20845 0.13 -1.1
4,409,065 + IAI46_20845 0.14 +0.0
4,409,065 + IAI46_20845 0.14 +0.3
4,409,066 - IAI46_20845 0.14 -0.2
4,409,066 - IAI46_20845 0.14 +0.2
4,409,072 - IAI46_20845 0.14 -0.7
4,409,168 + IAI46_20845 0.17 +1.0
4,409,198 - IAI46_20845 0.18 +0.6
4,409,230 + IAI46_20845 0.19 +0.2
4,409,270 + IAI46_20845 0.20 -0.2
4,409,270 + IAI46_20845 0.20 +0.3
4,409,270 + IAI46_20845 0.20 +0.2
4,409,358 - IAI46_20845 0.23 +0.4
4,409,423 + IAI46_20845 0.25 +1.1
4,409,573 + IAI46_20845 0.29 +1.1
4,409,574 - IAI46_20845 0.29 +1.1
4,409,575 + IAI46_20845 0.29 -0.3
4,409,576 - IAI46_20845 0.29 +0.9
4,409,695 - IAI46_20845 0.33 -0.4
4,409,885 + IAI46_20845 0.39 -0.5
4,409,886 - IAI46_20845 0.39 +0.4
4,409,912 - IAI46_20845 0.40 +0.7
4,409,961 - IAI46_20845 0.41 +0.9
4,410,037 + IAI46_20845 0.43 -0.0
4,410,084 + IAI46_20845 0.45 +0.5
4,410,084 + IAI46_20845 0.45 +0.5
4,410,085 - IAI46_20845 0.45 +1.9
4,410,172 + IAI46_20845 0.47 +0.9
4,410,172 + IAI46_20845 0.47 -0.0
4,410,173 - IAI46_20845 0.47 -0.3
4,410,173 - IAI46_20845 0.47 -0.0
4,410,173 - IAI46_20845 0.47 -0.8
4,410,256 + IAI46_20845 0.50 +0.6
4,410,256 + IAI46_20845 0.50 -1.5
4,410,256 + IAI46_20845 0.50 +0.9
4,410,256 + IAI46_20845 0.50 +0.3
4,410,257 - IAI46_20845 0.50 -0.2
4,410,350 + IAI46_20845 0.53 -0.9
4,410,381 + IAI46_20845 0.54 -0.2
4,410,382 - IAI46_20845 0.54 +0.4
4,410,449 - IAI46_20845 0.56 +0.2
4,410,551 + IAI46_20845 0.59 +0.3
4,410,657 - IAI46_20845 0.62 -0.1
4,410,668 + IAI46_20845 0.63 +1.0
4,410,669 - IAI46_20845 0.63 -0.5
4,410,676 + IAI46_20845 0.63 -1.0
4,410,687 + IAI46_20845 0.63 +0.1
4,410,701 - IAI46_20845 0.64 +1.0
4,410,738 - IAI46_20845 0.65 -0.1
4,410,746 + IAI46_20845 0.65 +1.1
4,410,825 - IAI46_20845 0.67 -0.6
4,410,828 - IAI46_20845 0.67 -0.3
4,410,828 - IAI46_20845 0.67 +0.3
4,410,836 - IAI46_20845 0.68 +1.0
4,410,886 + IAI46_20845 0.69 +0.3
4,410,886 + IAI46_20845 0.69 -0.2
4,410,887 - IAI46_20845 0.69 -0.1
4,410,887 - IAI46_20845 0.69 +0.4
4,410,894 - IAI46_20845 0.69 -0.8
4,410,916 + IAI46_20845 0.70 +0.5
4,410,916 + IAI46_20845 0.70 +0.8
4,410,975 - IAI46_20845 0.72 -0.2
4,410,975 - IAI46_20845 0.72 -0.4
4,411,032 + IAI46_20845 0.74 +0.2
4,411,033 - IAI46_20845 0.74 +0.8
4,411,033 - IAI46_20845 0.74 -0.3
4,411,048 + IAI46_20845 0.74 -0.7
4,411,049 - IAI46_20845 0.74 +0.2
4,411,096 + IAI46_20845 0.76 -0.6
4,411,096 + IAI46_20845 0.76 +1.1
4,411,096 + IAI46_20845 0.76 -0.1
4,411,096 + IAI46_20845 0.76 +0.5
4,411,096 + IAI46_20845 0.76 -0.1
4,411,096 + IAI46_20845 0.76 +0.4
4,411,096 + IAI46_20845 0.76 +1.1
4,411,097 - IAI46_20845 0.76 +1.5
4,411,097 - IAI46_20845 0.76 +0.2
4,411,097 - IAI46_20845 0.76 +0.0
4,411,097 - IAI46_20845 0.76 +0.7
4,411,097 - IAI46_20845 0.76 +0.8
4,411,097 - IAI46_20845 0.76 +1.0
4,411,097 - IAI46_20845 0.76 +0.3
4,411,097 - IAI46_20845 0.76 -0.1
4,411,097 - IAI46_20845 0.76 +0.8
4,411,097 - IAI46_20845 0.76 +0.5
4,411,097 - IAI46_20845 0.76 +0.3
4,411,097 - IAI46_20845 0.76 +0.4
4,411,097 - IAI46_20845 0.76 -1.3
4,411,131 - IAI46_20845 0.77 -1.2
4,411,131 - IAI46_20845 0.77 +0.2
4,411,210 - IAI46_20845 0.79 -0.3
4,411,247 + IAI46_20845 0.80 -0.1
4,411,247 + IAI46_20845 0.80 +0.4
4,411,248 - IAI46_20845 0.80 +0.3
4,411,248 - IAI46_20845 0.80 +0.7
4,411,248 - IAI46_20845 0.80 +0.4
4,411,248 - IAI46_20845 0.80 -0.0
4,411,250 + IAI46_20845 0.80 -1.1
4,411,250 + IAI46_20845 0.80 +0.2
4,411,250 + IAI46_20845 0.80 +0.4
4,411,251 - IAI46_20845 0.80 -0.5
4,411,251 - IAI46_20845 0.80 +0.3
4,411,377 + IAI46_20845 0.84 -0.2
4,411,378 - IAI46_20845 0.84 -0.2
4,411,389 + IAI46_20845 0.84 -0.1
4,411,389 + IAI46_20845 0.84 -0.9
4,411,390 - IAI46_20845 0.85 +0.8
4,411,632 + +0.5
4,411,633 - +0.2
4,411,664 + -1.3
4,411,664 + -0.1
4,411,664 + +0.1
4,411,664 + +0.2
4,411,665 - -0.6
4,411,668 - -0.2
4,411,762 + -1.5
4,411,831 + -0.7
4,411,831 + +0.4
4,411,831 + -1.1
4,411,864 - -0.4
4,411,917 - -1.3
4,412,052 + -0.9
4,412,134 + +0.5
4,412,141 - -0.4
4,412,146 + +0.4
4,412,181 - +0.2
4,412,224 + +0.5
4,412,224 + -0.1
4,412,239 - +0.5
4,412,275 + +0.4
4,412,337 - +0.1
4,412,573 + IAI46_20850 0.15 -0.1
4,412,574 - IAI46_20850 0.15 +1.0
4,412,607 - IAI46_20850 0.16 +1.0
4,412,608 + IAI46_20850 0.16 +0.5
4,412,608 + IAI46_20850 0.16 -0.6
4,412,608 + IAI46_20850 0.16 -0.3
4,412,608 + IAI46_20850 0.16 +1.3
4,412,609 - IAI46_20850 0.16 -1.1
4,412,609 - IAI46_20850 0.16 +0.5
4,412,621 - IAI46_20850 0.17 +0.5
4,412,645 + IAI46_20850 0.18 +0.3
4,412,647 + IAI46_20850 0.18 +0.0
4,412,647 + IAI46_20850 0.18 +0.2
4,412,647 + IAI46_20850 0.18 -0.2
4,412,648 - IAI46_20850 0.18 +0.1
4,412,658 - IAI46_20850 0.18 +0.0
4,412,713 + IAI46_20850 0.20 -0.2
4,412,713 + IAI46_20850 0.20 +0.2
4,412,713 + IAI46_20850 0.20 +1.5
4,412,713 + IAI46_20850 0.20 +1.1
4,412,713 + IAI46_20850 0.20 -0.0
4,412,713 + IAI46_20850 0.20 -0.9
4,412,713 + IAI46_20850 0.20 +0.2
4,412,713 + IAI46_20850 0.20 +1.5
4,412,714 - IAI46_20850 0.20 -0.1
4,412,714 - IAI46_20850 0.20 +1.5
4,412,714 - IAI46_20850 0.20 +0.6
4,412,714 - IAI46_20850 0.20 +0.2
4,412,714 - IAI46_20850 0.20 +0.4
4,412,714 - IAI46_20850 0.20 -1.6
4,412,735 + IAI46_20850 0.21 -0.9
4,412,736 - IAI46_20850 0.21 -0.5
4,412,785 - IAI46_20850 0.22 +1.0
4,412,785 - IAI46_20850 0.22 +0.4
4,412,885 + IAI46_20850 0.26 -0.0
4,412,885 + IAI46_20850 0.26 +0.1
4,412,897 + IAI46_20850 0.26 +0.8
4,412,898 - IAI46_20850 0.26 -0.6
4,412,898 - IAI46_20850 0.26 -0.4
4,412,898 - IAI46_20850 0.26 +1.3

Or see this region's nucleotide sequence