Strain Fitness in Serratia liquefaciens MT49 around IAI46_20140

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_20135 and IAI46_20140 are separated by 56 nucleotidesIAI46_20140 and IAI46_20145 are separated by 63 nucleotides IAI46_20135: IAI46_20135 - tRNA lysidine(34) synthetase TilS, at 4,243,579 to 4,244,889 _20135 IAI46_20140: IAI46_20140 - dipeptide permease DtpD, at 4,244,946 to 4,246,394 _20140 IAI46_20145: IAI46_20145 - lysine decarboxylase CadA, at 4,246,458 to 4,248,599 _20145 Position (kb) 4244 4245 4246 4247Strain fitness (log2 ratio) -2 -1 0 1at 4244.860 kb on + strandat 4244.872 kb on + strandat 4244.884 kb on - strandat 4244.884 kb on - strandat 4244.901 kb on - strandat 4244.901 kb on - strandat 4244.915 kb on - strandat 4244.915 kb on - strandat 4245.020 kb on + strandat 4245.020 kb on + strandat 4245.021 kb on - strandat 4245.021 kb on - strandat 4245.021 kb on - strandat 4245.065 kb on - strandat 4245.065 kb on - strandat 4245.065 kb on - strandat 4245.114 kb on + strand, within IAI46_20140at 4245.117 kb on - strand, within IAI46_20140at 4245.160 kb on + strand, within IAI46_20140at 4245.160 kb on + strand, within IAI46_20140at 4245.160 kb on + strand, within IAI46_20140at 4245.380 kb on + strand, within IAI46_20140at 4245.381 kb on - strand, within IAI46_20140at 4245.405 kb on + strand, within IAI46_20140at 4245.406 kb on - strand, within IAI46_20140at 4245.508 kb on + strand, within IAI46_20140at 4245.508 kb on + strand, within IAI46_20140at 4245.508 kb on + strand, within IAI46_20140at 4245.508 kb on + strand, within IAI46_20140at 4245.509 kb on - strand, within IAI46_20140at 4245.509 kb on - strand, within IAI46_20140at 4245.530 kb on + strand, within IAI46_20140at 4245.587 kb on + strand, within IAI46_20140at 4245.587 kb on + strand, within IAI46_20140at 4245.635 kb on + strand, within IAI46_20140at 4245.681 kb on + strand, within IAI46_20140at 4245.682 kb on - strand, within IAI46_20140at 4245.700 kb on + strand, within IAI46_20140at 4245.701 kb on - strand, within IAI46_20140at 4245.705 kb on - strand, within IAI46_20140at 4245.816 kb on - strand, within IAI46_20140at 4245.816 kb on - strand, within IAI46_20140at 4245.967 kb on + strand, within IAI46_20140at 4245.968 kb on - strand, within IAI46_20140at 4246.012 kb on + strand, within IAI46_20140at 4246.012 kb on + strand, within IAI46_20140at 4246.014 kb on + strand, within IAI46_20140at 4246.014 kb on + strand, within IAI46_20140at 4246.015 kb on - strand, within IAI46_20140at 4246.015 kb on - strand, within IAI46_20140at 4246.038 kb on - strand, within IAI46_20140at 4246.087 kb on + strand, within IAI46_20140at 4246.088 kb on - strand, within IAI46_20140at 4246.223 kb on - strand, within IAI46_20140at 4246.237 kb on + strand, within IAI46_20140at 4246.244 kb on + strand, within IAI46_20140at 4246.247 kb on - strand, within IAI46_20140at 4246.289 kb on + strandat 4246.289 kb on + strandat 4246.290 kb on - strandat 4246.290 kb on - strandat 4246.290 kb on - strandat 4246.295 kb on - strandat 4246.301 kb on + strandat 4246.301 kb on + strandat 4246.302 kb on - strandat 4246.302 kb on - strandat 4246.302 kb on - strandat 4246.305 kb on + strandat 4246.305 kb on + strandat 4246.306 kb on - strandat 4246.306 kb on - strandat 4246.322 kb on - strandat 4246.347 kb on + strandat 4246.353 kb on + strandat 4246.353 kb on + strandat 4246.360 kb on + strandat 4246.360 kb on + strandat 4246.361 kb on - strandat 4246.361 kb on - strandat 4246.361 kb on - strandat 4246.363 kb on + strandat 4246.363 kb on + strandat 4246.364 kb on - strandat 4246.364 kb on - strandat 4246.459 kb on + strandat 4246.459 kb on + strandat 4246.489 kb on + strandat 4246.511 kb on - strandat 4246.524 kb on - strandat 4246.646 kb on - strandat 4246.693 kb on + strand, within IAI46_20145at 4246.781 kb on - strand, within IAI46_20145at 4246.880 kb on - strand, within IAI46_20145at 4246.880 kb on - strand, within IAI46_20145at 4247.007 kb on - strand, within IAI46_20145at 4247.007 kb on - strand, within IAI46_20145at 4247.007 kb on - strand, within IAI46_20145at 4247.009 kb on - strand, within IAI46_20145at 4247.009 kb on - strand, within IAI46_20145at 4247.009 kb on - strand, within IAI46_20145at 4247.033 kb on + strand, within IAI46_20145at 4247.034 kb on - strand, within IAI46_20145at 4247.050 kb on + strand, within IAI46_20145at 4247.054 kb on + strand, within IAI46_20145at 4247.054 kb on + strand, within IAI46_20145at 4247.055 kb on - strand, within IAI46_20145at 4247.076 kb on - strand, within IAI46_20145at 4247.102 kb on + strand, within IAI46_20145at 4247.146 kb on + strand, within IAI46_20145at 4247.146 kb on + strand, within IAI46_20145at 4247.147 kb on - strand, within IAI46_20145at 4247.147 kb on - strand, within IAI46_20145at 4247.147 kb on - strand, within IAI46_20145at 4247.147 kb on - strand, within IAI46_20145at 4247.150 kb on + strand, within IAI46_20145at 4247.150 kb on + strand, within IAI46_20145at 4247.150 kb on + strand, within IAI46_20145at 4247.150 kb on + strand, within IAI46_20145at 4247.150 kb on + strand, within IAI46_20145at 4247.151 kb on - strand, within IAI46_20145at 4247.151 kb on - strand, within IAI46_20145at 4247.151 kb on - strand, within IAI46_20145at 4247.151 kb on - strand, within IAI46_20145at 4247.151 kb on - strand, within IAI46_20145at 4247.304 kb on - strand, within IAI46_20145at 4247.393 kb on - strand, within IAI46_20145at 4247.393 kb on - strand, within IAI46_20145

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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4,244,860 + -0.2
4,244,872 + +0.5
4,244,884 - +0.3
4,244,884 - +0.1
4,244,901 - -0.3
4,244,901 - +0.4
4,244,915 - -0.2
4,244,915 - -0.7
4,245,020 + -0.2
4,245,020 + -0.1
4,245,021 - -0.9
4,245,021 - +0.4
4,245,021 - +1.0
4,245,065 - +0.8
4,245,065 - -0.5
4,245,065 - +0.4
4,245,114 + IAI46_20140 0.12 +0.1
4,245,117 - IAI46_20140 0.12 -1.0
4,245,160 + IAI46_20140 0.15 +0.4
4,245,160 + IAI46_20140 0.15 +0.5
4,245,160 + IAI46_20140 0.15 -0.4
4,245,380 + IAI46_20140 0.30 +0.4
4,245,381 - IAI46_20140 0.30 +0.0
4,245,405 + IAI46_20140 0.32 +0.0
4,245,406 - IAI46_20140 0.32 +0.0
4,245,508 + IAI46_20140 0.39 -0.5
4,245,508 + IAI46_20140 0.39 +0.8
4,245,508 + IAI46_20140 0.39 -0.3
4,245,508 + IAI46_20140 0.39 -0.2
4,245,509 - IAI46_20140 0.39 +0.2
4,245,509 - IAI46_20140 0.39 +0.8
4,245,530 + IAI46_20140 0.40 -1.1
4,245,587 + IAI46_20140 0.44 -0.7
4,245,587 + IAI46_20140 0.44 -0.1
4,245,635 + IAI46_20140 0.48 -1.6
4,245,681 + IAI46_20140 0.51 +0.6
4,245,682 - IAI46_20140 0.51 -0.5
4,245,700 + IAI46_20140 0.52 -1.5
4,245,701 - IAI46_20140 0.52 -0.6
4,245,705 - IAI46_20140 0.52 -0.3
4,245,816 - IAI46_20140 0.60 +0.3
4,245,816 - IAI46_20140 0.60 -0.3
4,245,967 + IAI46_20140 0.70 +0.8
4,245,968 - IAI46_20140 0.71 -0.1
4,246,012 + IAI46_20140 0.74 +0.7
4,246,012 + IAI46_20140 0.74 +0.5
4,246,014 + IAI46_20140 0.74 +0.1
4,246,014 + IAI46_20140 0.74 -0.7
4,246,015 - IAI46_20140 0.74 +0.7
4,246,015 - IAI46_20140 0.74 -0.7
4,246,038 - IAI46_20140 0.75 +0.7
4,246,087 + IAI46_20140 0.79 +0.1
4,246,088 - IAI46_20140 0.79 -0.5
4,246,223 - IAI46_20140 0.88 +0.2
4,246,237 + IAI46_20140 0.89 -1.5
4,246,244 + IAI46_20140 0.90 -0.8
4,246,247 - IAI46_20140 0.90 -0.8
4,246,289 + +0.7
4,246,289 + +0.5
4,246,290 - -1.0
4,246,290 - +0.4
4,246,290 - -0.2
4,246,295 - -0.1
4,246,301 + +0.4
4,246,301 + +0.4
4,246,302 - +0.6
4,246,302 - -1.0
4,246,302 - +0.0
4,246,305 + -1.6
4,246,305 + -0.9
4,246,306 - -0.3
4,246,306 - +0.7
4,246,322 - +0.5
4,246,347 + -0.5
4,246,353 + -0.4
4,246,353 + +0.1
4,246,360 + -1.3
4,246,360 + +0.6
4,246,361 - +0.4
4,246,361 - -0.1
4,246,361 - +0.2
4,246,363 + +0.6
4,246,363 + -0.0
4,246,364 - -0.8
4,246,364 - +0.2
4,246,459 + -0.2
4,246,459 + -0.3
4,246,489 + +1.0
4,246,511 - -0.4
4,246,524 - -0.3
4,246,646 - -0.1
4,246,693 + IAI46_20145 0.11 +0.6
4,246,781 - IAI46_20145 0.15 -1.3
4,246,880 - IAI46_20145 0.20 -0.3
4,246,880 - IAI46_20145 0.20 -0.3
4,247,007 - IAI46_20145 0.26 -0.2
4,247,007 - IAI46_20145 0.26 -0.6
4,247,007 - IAI46_20145 0.26 -0.5
4,247,009 - IAI46_20145 0.26 -0.7
4,247,009 - IAI46_20145 0.26 -1.8
4,247,009 - IAI46_20145 0.26 +0.4
4,247,033 + IAI46_20145 0.27 -1.3
4,247,034 - IAI46_20145 0.27 +0.0
4,247,050 + IAI46_20145 0.28 +0.5
4,247,054 + IAI46_20145 0.28 +1.4
4,247,054 + IAI46_20145 0.28 -0.5
4,247,055 - IAI46_20145 0.28 +0.0
4,247,076 - IAI46_20145 0.29 -0.1
4,247,102 + IAI46_20145 0.30 -0.5
4,247,146 + IAI46_20145 0.32 -1.0
4,247,146 + IAI46_20145 0.32 -1.8
4,247,147 - IAI46_20145 0.32 +0.0
4,247,147 - IAI46_20145 0.32 +0.7
4,247,147 - IAI46_20145 0.32 +0.1
4,247,147 - IAI46_20145 0.32 -0.1
4,247,150 + IAI46_20145 0.32 +1.4
4,247,150 + IAI46_20145 0.32 +0.2
4,247,150 + IAI46_20145 0.32 +0.8
4,247,150 + IAI46_20145 0.32 +1.1
4,247,150 + IAI46_20145 0.32 -0.3
4,247,151 - IAI46_20145 0.32 +0.3
4,247,151 - IAI46_20145 0.32 -0.1
4,247,151 - IAI46_20145 0.32 +0.1
4,247,151 - IAI46_20145 0.32 -0.5
4,247,151 - IAI46_20145 0.32 -0.1
4,247,304 - IAI46_20145 0.39 +0.5
4,247,393 - IAI46_20145 0.44 +0.8
4,247,393 - IAI46_20145 0.44 -0.3

Or see this region's nucleotide sequence