Strain Fitness in Serratia liquefaciens MT49 around IAI46_18570

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_18560 and IAI46_18565 are separated by 77 nucleotidesIAI46_18565 and IAI46_18570 are separated by 102 nucleotidesIAI46_18570 and IAI46_18575 are separated by 194 nucleotides IAI46_18560: IAI46_18560 - S9 family peptidase, at 3,907,018 to 3,909,150 _18560 IAI46_18565: IAI46_18565 - energy transducer TonB, at 3,909,228 to 3,910,028 _18565 IAI46_18570: IAI46_18570 - ChaN family lipoprotein, at 3,910,131 to 3,910,970 _18570 IAI46_18575: IAI46_18575 - S-methylmethionine permease, at 3,911,165 to 3,912,574 _18575 Position (kb) 3910 3911Strain fitness (log2 ratio) -2 -1 0 1at 3909.144 kb on - strandat 3909.224 kb on + strandat 3909.229 kb on + strandat 3909.258 kb on - strandat 3909.447 kb on - strand, within IAI46_18565at 3909.453 kb on - strand, within IAI46_18565at 3909.453 kb on - strand, within IAI46_18565at 3909.751 kb on - strand, within IAI46_18565at 3909.751 kb on - strand, within IAI46_18565at 3909.807 kb on + strand, within IAI46_18565at 3909.807 kb on + strand, within IAI46_18565at 3909.807 kb on + strand, within IAI46_18565at 3909.808 kb on - strand, within IAI46_18565at 3909.920 kb on - strand, within IAI46_18565at 3910.023 kb on + strandat 3910.024 kb on - strandat 3910.024 kb on - strandat 3910.037 kb on + strandat 3910.037 kb on + strandat 3910.037 kb on + strandat 3910.037 kb on + strandat 3910.037 kb on + strandat 3910.037 kb on + strandat 3910.037 kb on + strandat 3910.038 kb on - strandat 3910.042 kb on + strandat 3910.102 kb on + strandat 3910.103 kb on - strandat 3910.137 kb on + strandat 3910.159 kb on + strandat 3910.160 kb on - strandat 3910.160 kb on - strandat 3910.210 kb on - strandat 3910.279 kb on + strand, within IAI46_18570at 3910.416 kb on - strand, within IAI46_18570at 3910.518 kb on - strand, within IAI46_18570at 3910.557 kb on + strand, within IAI46_18570at 3910.614 kb on + strand, within IAI46_18570at 3910.771 kb on + strand, within IAI46_18570at 3910.772 kb on - strand, within IAI46_18570at 3910.772 kb on - strand, within IAI46_18570at 3910.772 kb on - strand, within IAI46_18570at 3910.887 kb on - strandat 3910.895 kb on + strandat 3910.987 kb on - strandat 3911.060 kb on + strandat 3911.061 kb on - strandat 3911.107 kb on - strandat 3911.107 kb on - strandat 3911.116 kb on - strandat 3911.116 kb on - strandat 3911.118 kb on - strandat 3911.125 kb on - strandat 3911.133 kb on - strandat 3911.150 kb on + strandat 3911.279 kb on + strandat 3911.280 kb on - strandat 3911.280 kb on - strandat 3911.281 kb on + strandat 3911.322 kb on - strand, within IAI46_18575at 3911.345 kb on + strand, within IAI46_18575at 3911.345 kb on + strand, within IAI46_18575at 3911.462 kb on + strand, within IAI46_18575at 3911.526 kb on - strand, within IAI46_18575at 3911.526 kb on - strand, within IAI46_18575at 3911.526 kb on - strand, within IAI46_18575at 3911.526 kb on - strand, within IAI46_18575at 3911.595 kb on + strand, within IAI46_18575at 3911.596 kb on - strand, within IAI46_18575at 3911.596 kb on - strand, within IAI46_18575at 3911.596 kb on - strand, within IAI46_18575at 3911.596 kb on - strand, within IAI46_18575at 3911.656 kb on + strand, within IAI46_18575at 3911.938 kb on + strand, within IAI46_18575

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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3,909,144 - +0.0
3,909,224 + +0.2
3,909,229 + -0.6
3,909,258 - -0.2
3,909,447 - IAI46_18565 0.27 +1.2
3,909,453 - IAI46_18565 0.28 +0.3
3,909,453 - IAI46_18565 0.28 -0.9
3,909,751 - IAI46_18565 0.65 -0.8
3,909,751 - IAI46_18565 0.65 +0.8
3,909,807 + IAI46_18565 0.72 -0.9
3,909,807 + IAI46_18565 0.72 +1.1
3,909,807 + IAI46_18565 0.72 -0.6
3,909,808 - IAI46_18565 0.72 +0.1
3,909,920 - IAI46_18565 0.86 -0.9
3,910,023 + +0.2
3,910,024 - +0.3
3,910,024 - +0.9
3,910,037 + +0.9
3,910,037 + +0.8
3,910,037 + +0.4
3,910,037 + -0.2
3,910,037 + -0.7
3,910,037 + -1.8
3,910,037 + +0.9
3,910,038 - +0.5
3,910,042 + +0.7
3,910,102 + -0.7
3,910,103 - -0.1
3,910,137 + -0.5
3,910,159 + +0.2
3,910,160 - -0.1
3,910,160 - -0.3
3,910,210 - -0.4
3,910,279 + IAI46_18570 0.18 +0.3
3,910,416 - IAI46_18570 0.34 +0.7
3,910,518 - IAI46_18570 0.46 +0.1
3,910,557 + IAI46_18570 0.51 -0.1
3,910,614 + IAI46_18570 0.57 -0.1
3,910,771 + IAI46_18570 0.76 +1.4
3,910,772 - IAI46_18570 0.76 -1.0
3,910,772 - IAI46_18570 0.76 -0.0
3,910,772 - IAI46_18570 0.76 +0.0
3,910,887 - -1.1
3,910,895 + -0.0
3,910,987 - +0.3
3,911,060 + +1.0
3,911,061 - -1.0
3,911,107 - -1.6
3,911,107 - -0.6
3,911,116 - +0.6
3,911,116 - +0.3
3,911,118 - -0.2
3,911,125 - +0.0
3,911,133 - +0.2
3,911,150 + +1.1
3,911,279 + +0.3
3,911,280 - -0.7
3,911,280 - +0.3
3,911,281 + +0.6
3,911,322 - IAI46_18575 0.11 +0.7
3,911,345 + IAI46_18575 0.13 +0.1
3,911,345 + IAI46_18575 0.13 -1.0
3,911,462 + IAI46_18575 0.21 +0.5
3,911,526 - IAI46_18575 0.26 -0.3
3,911,526 - IAI46_18575 0.26 +0.1
3,911,526 - IAI46_18575 0.26 +0.4
3,911,526 - IAI46_18575 0.26 +1.0
3,911,595 + IAI46_18575 0.30 +0.7
3,911,596 - IAI46_18575 0.31 -1.0
3,911,596 - IAI46_18575 0.31 +0.4
3,911,596 - IAI46_18575 0.31 -0.9
3,911,596 - IAI46_18575 0.31 -0.0
3,911,656 + IAI46_18575 0.35 +1.2
3,911,938 + IAI46_18575 0.55 -0.1

Or see this region's nucleotide sequence