Strain Fitness in Serratia liquefaciens MT49 around IAI46_18050

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_18045 and IAI46_18050 overlap by 1 nucleotidesIAI46_18050 and IAI46_18055 are separated by 193 nucleotidesIAI46_18055 and IAI46_18060 are separated by 405 nucleotides IAI46_18045: IAI46_18045 - fatty acid oxidation complex subunit alpha FadJ, at 3,802,962 to 3,805,127 _18045 IAI46_18050: IAI46_18050 - acetyl-CoA C-acyltransferase FadI, at 3,805,127 to 3,806,437 _18050 IAI46_18055: IAI46_18055 - YfcZ/YiiS family protein, at 3,806,631 to 3,806,927 _18055 IAI46_18060: IAI46_18060 - long-chain fatty acid transporter FadL, at 3,807,333 to 3,808,655 _18060 Position (kb) 3805 3806 3807Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3804.221 kb on + strand, within IAI46_18045at 3804.222 kb on - strand, within IAI46_18045at 3804.347 kb on + strand, within IAI46_18045at 3804.367 kb on + strand, within IAI46_18045at 3804.368 kb on - strand, within IAI46_18045at 3804.425 kb on + strand, within IAI46_18045at 3804.426 kb on - strand, within IAI46_18045at 3804.670 kb on - strand, within IAI46_18045at 3804.759 kb on + strand, within IAI46_18045at 3804.822 kb on - strand, within IAI46_18045at 3804.866 kb on + strand, within IAI46_18045at 3804.926 kb on + strandat 3804.972 kb on + strandat 3804.972 kb on + strandat 3804.972 kb on + strandat 3804.973 kb on - strandat 3804.973 kb on - strandat 3805.014 kb on + strandat 3805.014 kb on + strandat 3805.129 kb on - strandat 3805.140 kb on - strandat 3805.290 kb on - strand, within IAI46_18050at 3805.471 kb on + strand, within IAI46_18050at 3805.476 kb on + strand, within IAI46_18050at 3805.495 kb on + strand, within IAI46_18050at 3805.495 kb on + strand, within IAI46_18050at 3805.495 kb on + strand, within IAI46_18050at 3805.496 kb on - strand, within IAI46_18050at 3805.622 kb on - strand, within IAI46_18050at 3805.749 kb on + strand, within IAI46_18050at 3805.749 kb on + strand, within IAI46_18050at 3805.750 kb on - strand, within IAI46_18050at 3805.750 kb on - strand, within IAI46_18050at 3805.906 kb on - strand, within IAI46_18050at 3806.137 kb on + strand, within IAI46_18050at 3806.137 kb on + strand, within IAI46_18050at 3806.158 kb on + strand, within IAI46_18050at 3806.158 kb on + strand, within IAI46_18050at 3806.159 kb on - strand, within IAI46_18050at 3806.159 kb on - strand, within IAI46_18050at 3806.161 kb on - strand, within IAI46_18050at 3806.161 kb on - strand, within IAI46_18050at 3806.161 kb on - strand, within IAI46_18050at 3806.161 kb on - strand, within IAI46_18050at 3806.170 kb on + strand, within IAI46_18050at 3806.291 kb on + strand, within IAI46_18050at 3806.303 kb on + strand, within IAI46_18050at 3806.343 kb on + strandat 3806.344 kb on - strandat 3806.385 kb on - strandat 3806.395 kb on + strandat 3806.396 kb on - strandat 3806.432 kb on - strandat 3806.620 kb on + strandat 3806.720 kb on + strand, within IAI46_18055at 3806.720 kb on + strand, within IAI46_18055at 3806.720 kb on + strand, within IAI46_18055at 3806.727 kb on - strand, within IAI46_18055at 3806.828 kb on - strand, within IAI46_18055at 3806.847 kb on - strand, within IAI46_18055at 3806.904 kb on - strandat 3806.910 kb on - strandat 3806.913 kb on - strandat 3806.977 kb on - strandat 3806.981 kb on - strandat 3807.038 kb on + strandat 3807.039 kb on - strandat 3807.054 kb on + strandat 3807.117 kb on - strandat 3807.220 kb on + strandat 3807.221 kb on - strandat 3807.221 kb on - strandat 3807.221 kb on - strandat 3807.263 kb on + strandat 3807.297 kb on + strandat 3807.317 kb on + strandat 3807.318 kb on - strandat 3807.354 kb on - strandat 3807.356 kb on + strandat 3807.386 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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3,804,221 + IAI46_18045 0.58 +0.3
3,804,222 - IAI46_18045 0.58 -0.4
3,804,347 + IAI46_18045 0.64 +0.3
3,804,367 + IAI46_18045 0.65 +0.3
3,804,368 - IAI46_18045 0.65 +0.2
3,804,425 + IAI46_18045 0.68 +0.9
3,804,426 - IAI46_18045 0.68 +0.8
3,804,670 - IAI46_18045 0.79 +0.9
3,804,759 + IAI46_18045 0.83 -0.5
3,804,822 - IAI46_18045 0.86 +0.5
3,804,866 + IAI46_18045 0.88 -0.1
3,804,926 + -0.9
3,804,972 + +0.2
3,804,972 + -0.1
3,804,972 + +0.6
3,804,973 - -1.6
3,804,973 - +0.1
3,805,014 + +0.0
3,805,014 + +0.8
3,805,129 - -1.0
3,805,140 - +0.6
3,805,290 - IAI46_18050 0.12 +0.2
3,805,471 + IAI46_18050 0.26 -0.1
3,805,476 + IAI46_18050 0.27 +0.5
3,805,495 + IAI46_18050 0.28 +1.9
3,805,495 + IAI46_18050 0.28 -0.8
3,805,495 + IAI46_18050 0.28 +0.6
3,805,496 - IAI46_18050 0.28 +0.6
3,805,622 - IAI46_18050 0.38 -0.1
3,805,749 + IAI46_18050 0.47 +0.7
3,805,749 + IAI46_18050 0.47 +1.3
3,805,750 - IAI46_18050 0.48 -0.7
3,805,750 - IAI46_18050 0.48 -0.8
3,805,906 - IAI46_18050 0.59 -2.6
3,806,137 + IAI46_18050 0.77 -0.8
3,806,137 + IAI46_18050 0.77 -1.0
3,806,158 + IAI46_18050 0.79 -0.9
3,806,158 + IAI46_18050 0.79 -0.5
3,806,159 - IAI46_18050 0.79 -0.0
3,806,159 - IAI46_18050 0.79 -0.1
3,806,161 - IAI46_18050 0.79 -0.8
3,806,161 - IAI46_18050 0.79 +0.4
3,806,161 - IAI46_18050 0.79 -1.1
3,806,161 - IAI46_18050 0.79 +1.6
3,806,170 + IAI46_18050 0.80 +0.8
3,806,291 + IAI46_18050 0.89 -0.2
3,806,303 + IAI46_18050 0.90 +0.5
3,806,343 + -0.1
3,806,344 - +0.3
3,806,385 - +1.4
3,806,395 + +0.4
3,806,396 - +0.4
3,806,432 - +0.0
3,806,620 + +1.5
3,806,720 + IAI46_18055 0.30 -0.5
3,806,720 + IAI46_18055 0.30 -0.7
3,806,720 + IAI46_18055 0.30 -0.2
3,806,727 - IAI46_18055 0.32 -0.0
3,806,828 - IAI46_18055 0.66 -0.1
3,806,847 - IAI46_18055 0.73 +0.4
3,806,904 - -1.2
3,806,910 - +0.4
3,806,913 - -0.4
3,806,977 - -0.1
3,806,981 - -0.0
3,807,038 + -3.1
3,807,039 - -0.3
3,807,054 + -0.8
3,807,117 - +1.5
3,807,220 + -0.8
3,807,221 - +0.4
3,807,221 - -0.1
3,807,221 - +0.8
3,807,263 + -0.2
3,807,297 + -0.6
3,807,317 + -0.2
3,807,318 - +1.2
3,807,354 - -0.1
3,807,356 + -0.1
3,807,386 + -0.1

Or see this region's nucleotide sequence