Strain Fitness in Serratia liquefaciens MT49 around IAI46_17650

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17640 and IAI46_17645 are separated by 39 nucleotidesIAI46_17645 and IAI46_17650 are separated by 62 nucleotidesIAI46_17650 and IAI46_17655 are separated by 6 nucleotides IAI46_17640: IAI46_17640 - type II toxin-antitoxin system RelE/ParE family toxin, at 3,717,431 to 3,717,691 _17640 IAI46_17645: IAI46_17645 - helix-turn-helix domain-containing protein, at 3,717,731 to 3,718,096 _17645 IAI46_17650: IAI46_17650 - NADH-quinone oxidoreductase subunit NuoN, at 3,718,159 to 3,719,616 _17650 IAI46_17655: IAI46_17655 - NADH-quinone oxidoreductase subunit M, at 3,719,623 to 3,721,152 _17655 Position (kb) 3718 3719 3720Strain fitness (log2 ratio) -2 -1 0 1 2at 3717.309 kb on + strandat 3717.309 kb on + strandat 3717.387 kb on + strandat 3717.395 kb on + strandat 3717.443 kb on - strandat 3717.464 kb on - strand, within IAI46_17640at 3717.640 kb on + strand, within IAI46_17640at 3717.640 kb on + strand, within IAI46_17640at 3717.640 kb on + strand, within IAI46_17640at 3717.640 kb on + strand, within IAI46_17640at 3717.671 kb on - strandat 3717.671 kb on - strandat 3717.687 kb on - strandat 3717.741 kb on + strandat 3717.746 kb on + strandat 3717.746 kb on + strandat 3717.746 kb on + strandat 3717.747 kb on - strandat 3717.747 kb on - strandat 3717.748 kb on + strandat 3717.748 kb on + strandat 3717.748 kb on + strandat 3717.748 kb on + strandat 3717.776 kb on + strand, within IAI46_17645at 3717.783 kb on + strand, within IAI46_17645at 3717.801 kb on - strand, within IAI46_17645at 3717.803 kb on - strand, within IAI46_17645at 3717.830 kb on + strand, within IAI46_17645at 3717.831 kb on - strand, within IAI46_17645at 3717.850 kb on + strand, within IAI46_17645at 3717.851 kb on - strand, within IAI46_17645at 3717.851 kb on - strand, within IAI46_17645at 3717.896 kb on - strand, within IAI46_17645at 3718.062 kb on + strandat 3718.062 kb on + strandat 3718.062 kb on + strandat 3718.064 kb on + strandat 3718.064 kb on + strandat 3718.072 kb on + strandat 3718.072 kb on + strandat 3718.073 kb on - strandat 3718.094 kb on + strandat 3718.095 kb on - strandat 3718.095 kb on - strandat 3718.095 kb on - strandat 3718.252 kb on + strandat 3718.344 kb on - strand, within IAI46_17650at 3718.347 kb on - strand, within IAI46_17650at 3718.347 kb on - strand, within IAI46_17650at 3718.349 kb on + strand, within IAI46_17650at 3718.512 kb on + strand, within IAI46_17650at 3718.513 kb on - strand, within IAI46_17650at 3719.141 kb on + strand, within IAI46_17650at 3719.300 kb on + strand, within IAI46_17650at 3719.352 kb on + strand, within IAI46_17650at 3719.391 kb on - strand, within IAI46_17650at 3719.391 kb on - strand, within IAI46_17650at 3719.391 kb on - strand, within IAI46_17650at 3719.459 kb on + strand, within IAI46_17650at 3719.539 kb on + strandat 3719.608 kb on + strandat 3719.624 kb on + strandat 3719.695 kb on - strandat 3719.695 kb on - strandat 3719.695 kb on - strandat 3719.823 kb on - strand, within IAI46_17655at 3719.823 kb on - strand, within IAI46_17655at 3719.909 kb on + strand, within IAI46_17655at 3719.946 kb on + strand, within IAI46_17655at 3720.006 kb on - strand, within IAI46_17655at 3720.012 kb on + strand, within IAI46_17655at 3720.162 kb on - strand, within IAI46_17655at 3720.162 kb on - strand, within IAI46_17655at 3720.491 kb on + strand, within IAI46_17655at 3720.491 kb on + strand, within IAI46_17655at 3720.562 kb on - strand, within IAI46_17655at 3720.565 kb on - strand, within IAI46_17655

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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3,717,309 + -1.2
3,717,309 + +0.1
3,717,387 + +0.4
3,717,395 + -0.9
3,717,443 - +0.2
3,717,464 - IAI46_17640 0.13 +0.1
3,717,640 + IAI46_17640 0.80 -0.3
3,717,640 + IAI46_17640 0.80 -0.4
3,717,640 + IAI46_17640 0.80 +0.8
3,717,640 + IAI46_17640 0.80 +0.9
3,717,671 - +0.6
3,717,671 - -0.6
3,717,687 - +1.1
3,717,741 + +0.3
3,717,746 + +1.2
3,717,746 + +0.8
3,717,746 + +0.7
3,717,747 - -0.9
3,717,747 - +0.8
3,717,748 + -0.4
3,717,748 + +0.4
3,717,748 + +0.3
3,717,748 + -1.2
3,717,776 + IAI46_17645 0.12 -1.0
3,717,783 + IAI46_17645 0.14 +1.1
3,717,801 - IAI46_17645 0.19 -0.5
3,717,803 - IAI46_17645 0.20 +0.4
3,717,830 + IAI46_17645 0.27 -1.7
3,717,831 - IAI46_17645 0.27 +0.2
3,717,850 + IAI46_17645 0.33 +0.0
3,717,851 - IAI46_17645 0.33 +0.3
3,717,851 - IAI46_17645 0.33 +0.9
3,717,896 - IAI46_17645 0.45 -0.1
3,718,062 + +0.3
3,718,062 + -1.2
3,718,062 + +1.3
3,718,064 + -0.2
3,718,064 + -1.3
3,718,072 + -0.3
3,718,072 + -2.1
3,718,073 - +0.0
3,718,094 + +0.2
3,718,095 - -0.6
3,718,095 - -0.3
3,718,095 - -0.4
3,718,252 + +0.3
3,718,344 - IAI46_17650 0.13 -0.4
3,718,347 - IAI46_17650 0.13 -1.0
3,718,347 - IAI46_17650 0.13 -0.6
3,718,349 + IAI46_17650 0.13 +0.1
3,718,512 + IAI46_17650 0.24 -1.1
3,718,513 - IAI46_17650 0.24 +1.8
3,719,141 + IAI46_17650 0.67 +0.3
3,719,300 + IAI46_17650 0.78 -1.3
3,719,352 + IAI46_17650 0.82 -0.5
3,719,391 - IAI46_17650 0.84 +1.4
3,719,391 - IAI46_17650 0.84 +0.4
3,719,391 - IAI46_17650 0.84 -0.3
3,719,459 + IAI46_17650 0.89 -0.9
3,719,539 + +0.4
3,719,608 + +2.5
3,719,624 + +1.4
3,719,695 - +0.4
3,719,695 - +0.1
3,719,695 - -2.1
3,719,823 - IAI46_17655 0.13 -0.0
3,719,823 - IAI46_17655 0.13 -1.1
3,719,909 + IAI46_17655 0.19 +0.1
3,719,946 + IAI46_17655 0.21 +0.7
3,720,006 - IAI46_17655 0.25 +0.6
3,720,012 + IAI46_17655 0.25 +1.7
3,720,162 - IAI46_17655 0.35 +0.8
3,720,162 - IAI46_17655 0.35 +1.0
3,720,491 + IAI46_17655 0.57 -0.5
3,720,491 + IAI46_17655 0.57 +0.2
3,720,562 - IAI46_17655 0.61 +2.2
3,720,565 - IAI46_17655 0.62 -0.3

Or see this region's nucleotide sequence