Strain Fitness in Serratia liquefaciens MT49 around IAI46_16350

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16345 and IAI46_16350 are separated by 318 nucleotidesIAI46_16350 and IAI46_16355 are separated by 10 nucleotidesIAI46_16355 and IAI46_16360 are separated by 8 nucleotides IAI46_16345: IAI46_16345 - phenylacetic acid degradation bifunctional protein PaaZ, at 3,424,961 to 3,427,033 _16345 IAI46_16350: IAI46_16350 - 1,2-phenylacetyl-CoA epoxidase subunit A, at 3,427,352 to 3,428,290 _16350 IAI46_16355: IAI46_16355 - 1,2-phenylacetyl-CoA epoxidase subunit B, at 3,428,301 to 3,428,588 _16355 IAI46_16360: IAI46_16360 - phenylacetate-CoA oxygenase subunit PaaC, at 3,428,597 to 3,429,358 _16360 Position (kb) 3427 3428 3429Strain fitness (log2 ratio) -2 -1 0 1 2at 3426.363 kb on + strand, within IAI46_16345at 3426.382 kb on + strand, within IAI46_16345at 3426.401 kb on + strand, within IAI46_16345at 3426.572 kb on - strand, within IAI46_16345at 3426.574 kb on + strand, within IAI46_16345at 3426.575 kb on - strand, within IAI46_16345at 3426.575 kb on - strand, within IAI46_16345at 3426.786 kb on + strand, within IAI46_16345at 3426.895 kb on - strandat 3426.895 kb on - strandat 3426.939 kb on + strandat 3426.994 kb on - strandat 3427.014 kb on + strandat 3427.014 kb on + strandat 3427.022 kb on + strandat 3427.081 kb on - strandat 3427.206 kb on + strandat 3427.596 kb on - strand, within IAI46_16350at 3427.601 kb on + strand, within IAI46_16350at 3427.643 kb on + strand, within IAI46_16350at 3427.673 kb on + strand, within IAI46_16350at 3427.673 kb on + strand, within IAI46_16350at 3427.674 kb on - strand, within IAI46_16350at 3427.794 kb on - strand, within IAI46_16350at 3428.186 kb on - strand, within IAI46_16350at 3428.325 kb on + strandat 3428.325 kb on + strandat 3428.326 kb on - strandat 3428.428 kb on - strand, within IAI46_16355at 3428.428 kb on - strand, within IAI46_16355at 3428.538 kb on + strand, within IAI46_16355at 3428.557 kb on - strand, within IAI46_16355at 3428.557 kb on - strand, within IAI46_16355at 3428.557 kb on - strand, within IAI46_16355at 3428.586 kb on + strandat 3428.586 kb on + strandat 3428.586 kb on + strandat 3428.586 kb on + strandat 3428.627 kb on + strandat 3428.627 kb on + strandat 3428.628 kb on - strandat 3428.742 kb on + strand, within IAI46_16360at 3428.743 kb on - strand, within IAI46_16360at 3428.918 kb on + strand, within IAI46_16360at 3429.005 kb on + strand, within IAI46_16360

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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3,426,363 + IAI46_16345 0.68 +0.3
3,426,382 + IAI46_16345 0.69 +1.1
3,426,401 + IAI46_16345 0.69 -0.5
3,426,572 - IAI46_16345 0.78 -0.0
3,426,574 + IAI46_16345 0.78 +0.6
3,426,575 - IAI46_16345 0.78 +0.2
3,426,575 - IAI46_16345 0.78 -0.6
3,426,786 + IAI46_16345 0.88 -1.3
3,426,895 - +1.3
3,426,895 - +0.1
3,426,939 + +1.4
3,426,994 - +1.0
3,427,014 + -0.5
3,427,014 + -1.5
3,427,022 + -0.5
3,427,081 - -0.1
3,427,206 + -1.9
3,427,596 - IAI46_16350 0.26 -0.4
3,427,601 + IAI46_16350 0.27 -1.9
3,427,643 + IAI46_16350 0.31 +0.1
3,427,673 + IAI46_16350 0.34 -1.7
3,427,673 + IAI46_16350 0.34 +0.4
3,427,674 - IAI46_16350 0.34 +0.3
3,427,794 - IAI46_16350 0.47 -0.8
3,428,186 - IAI46_16350 0.89 +1.8
3,428,325 + -0.8
3,428,325 + -0.1
3,428,326 - -1.4
3,428,428 - IAI46_16355 0.44 -0.1
3,428,428 - IAI46_16355 0.44 +1.0
3,428,538 + IAI46_16355 0.82 +0.9
3,428,557 - IAI46_16355 0.89 -0.4
3,428,557 - IAI46_16355 0.89 +0.4
3,428,557 - IAI46_16355 0.89 +0.2
3,428,586 + -0.9
3,428,586 + +0.3
3,428,586 + -0.8
3,428,586 + +0.1
3,428,627 + +0.4
3,428,627 + -0.2
3,428,628 - -1.7
3,428,742 + IAI46_16360 0.19 +0.5
3,428,743 - IAI46_16360 0.19 +0.1
3,428,918 + IAI46_16360 0.42 -0.3
3,429,005 + IAI46_16360 0.54 -0.4

Or see this region's nucleotide sequence