Strain Fitness in Serratia liquefaciens MT49 around IAI46_15860

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15855 and IAI46_15860 are separated by 22 nucleotidesIAI46_15860 and IAI46_15865 overlap by 4 nucleotides IAI46_15855: IAI46_15855 - flagellum-specific ATP synthase FliI, at 3,330,432 to 3,331,793 _15855 IAI46_15860: IAI46_15860 - flagella biosynthesis chaperone FliJ, at 3,331,816 to 3,332,262 _15860 IAI46_15865: IAI46_15865 - flagellar hook-length control protein FliK, at 3,332,259 to 3,333,473 _15865 Position (kb) 3331 3332 3333Strain fitness (log2 ratio) -2 -1 0 1at 3331.318 kb on - strand, within IAI46_15855at 3331.620 kb on + strand, within IAI46_15855at 3331.656 kb on + strand, within IAI46_15855at 3331.720 kb on - strandat 3331.868 kb on + strand, within IAI46_15860at 3331.869 kb on - strand, within IAI46_15860at 3331.869 kb on - strand, within IAI46_15860at 3332.020 kb on + strand, within IAI46_15860at 3332.020 kb on + strand, within IAI46_15860at 3332.021 kb on - strand, within IAI46_15860at 3332.021 kb on - strand, within IAI46_15860at 3332.252 kb on + strandat 3332.252 kb on + strandat 3332.252 kb on + strandat 3332.253 kb on - strandat 3332.253 kb on - strandat 3332.513 kb on - strand, within IAI46_15865at 3332.556 kb on - strand, within IAI46_15865at 3333.028 kb on + strand, within IAI46_15865at 3333.028 kb on + strand, within IAI46_15865

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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3,331,318 - IAI46_15855 0.65 +0.3
3,331,620 + IAI46_15855 0.87 -0.0
3,331,656 + IAI46_15855 0.90 -2.1
3,331,720 - +1.0
3,331,868 + IAI46_15860 0.12 -0.7
3,331,869 - IAI46_15860 0.12 +1.0
3,331,869 - IAI46_15860 0.12 -0.1
3,332,020 + IAI46_15860 0.46 +0.7
3,332,020 + IAI46_15860 0.46 +0.1
3,332,021 - IAI46_15860 0.46 +1.0
3,332,021 - IAI46_15860 0.46 -0.3
3,332,252 + +0.3
3,332,252 + -0.1
3,332,252 + -0.4
3,332,253 - +0.0
3,332,253 - +1.0
3,332,513 - IAI46_15865 0.21 +0.3
3,332,556 - IAI46_15865 0.24 +1.1
3,333,028 + IAI46_15865 0.63 +0.0
3,333,028 + IAI46_15865 0.63 +0.4

Or see this region's nucleotide sequence