Strain Fitness in Serratia liquefaciens MT49 around IAI46_15530

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15525 and IAI46_15530 are separated by 575 nucleotidesIAI46_15530 and IAI46_15535 are separated by 56 nucleotides IAI46_15525: IAI46_15525 - nitrate reductase subunit alpha, at 3,249,262 to 3,253,038 _15525 IAI46_15530: IAI46_15530 - hypothetical protein, at 3,253,614 to 3,254,867 _15530 IAI46_15535: IAI46_15535 - glycosyltransferase family 2 protein, at 3,254,924 to 3,255,826 _15535 Position (kb) 3253 3254 3255Strain fitness (log2 ratio) -2 -1 0 1 2at 3252.734 kb on + strandat 3252.734 kb on + strandat 3252.735 kb on - strandat 3252.743 kb on + strandat 3252.744 kb on - strandat 3253.128 kb on + strandat 3253.128 kb on + strandat 3253.136 kb on + strandat 3253.137 kb on - strandat 3253.137 kb on - strandat 3253.140 kb on + strandat 3253.141 kb on - strandat 3253.154 kb on + strandat 3253.163 kb on + strandat 3253.184 kb on + strandat 3253.223 kb on - strandat 3253.308 kb on + strandat 3253.371 kb on + strandat 3253.371 kb on + strandat 3253.371 kb on + strandat 3253.513 kb on + strandat 3253.526 kb on - strandat 3253.615 kb on + strandat 3253.620 kb on + strandat 3253.676 kb on - strandat 3253.684 kb on + strandat 3253.685 kb on - strandat 3253.775 kb on - strand, within IAI46_15530at 3253.775 kb on - strand, within IAI46_15530at 3253.786 kb on - strand, within IAI46_15530at 3253.793 kb on + strand, within IAI46_15530at 3253.795 kb on + strand, within IAI46_15530at 3253.796 kb on - strand, within IAI46_15530at 3253.832 kb on - strand, within IAI46_15530at 3254.019 kb on - strand, within IAI46_15530at 3254.063 kb on + strand, within IAI46_15530at 3254.064 kb on - strand, within IAI46_15530at 3254.096 kb on - strand, within IAI46_15530at 3254.108 kb on - strand, within IAI46_15530at 3254.108 kb on - strand, within IAI46_15530at 3254.120 kb on + strand, within IAI46_15530at 3254.121 kb on - strand, within IAI46_15530at 3254.121 kb on - strand, within IAI46_15530at 3254.121 kb on - strand, within IAI46_15530at 3254.121 kb on - strand, within IAI46_15530at 3254.121 kb on - strand, within IAI46_15530at 3254.122 kb on + strand, within IAI46_15530at 3254.122 kb on + strand, within IAI46_15530at 3254.123 kb on - strand, within IAI46_15530at 3254.123 kb on - strand, within IAI46_15530at 3254.157 kb on - strand, within IAI46_15530at 3254.345 kb on + strand, within IAI46_15530at 3254.418 kb on - strand, within IAI46_15530at 3254.522 kb on - strand, within IAI46_15530at 3254.605 kb on + strand, within IAI46_15530at 3254.671 kb on + strand, within IAI46_15530at 3254.753 kb on - strandat 3254.790 kb on + strandat 3254.832 kb on + strandat 3254.867 kb on + strandat 3254.895 kb on + strandat 3254.973 kb on + strandat 3254.973 kb on + strandat 3254.974 kb on - strandat 3254.974 kb on - strandat 3254.996 kb on - strandat 3255.003 kb on + strandat 3255.004 kb on - strandat 3255.073 kb on + strand, within IAI46_15535at 3255.073 kb on + strand, within IAI46_15535at 3255.074 kb on - strand, within IAI46_15535at 3255.120 kb on - strand, within IAI46_15535at 3255.120 kb on - strand, within IAI46_15535at 3255.120 kb on - strand, within IAI46_15535at 3255.169 kb on + strand, within IAI46_15535at 3255.170 kb on - strand, within IAI46_15535at 3255.284 kb on - strand, within IAI46_15535at 3255.284 kb on - strand, within IAI46_15535at 3255.284 kb on - strand, within IAI46_15535at 3255.338 kb on - strand, within IAI46_15535at 3255.364 kb on - strand, within IAI46_15535at 3255.414 kb on + strand, within IAI46_15535at 3255.417 kb on + strand, within IAI46_15535at 3255.418 kb on - strand, within IAI46_15535at 3255.418 kb on - strand, within IAI46_15535at 3255.451 kb on + strand, within IAI46_15535at 3255.494 kb on - strand, within IAI46_15535at 3255.532 kb on - strand, within IAI46_15535at 3255.558 kb on + strand, within IAI46_15535at 3255.589 kb on + strand, within IAI46_15535at 3255.630 kb on + strand, within IAI46_15535at 3255.631 kb on - strand, within IAI46_15535at 3255.634 kb on + strand, within IAI46_15535at 3255.634 kb on + strand, within IAI46_15535at 3255.635 kb on - strand, within IAI46_15535at 3255.752 kb on + strandat 3255.752 kb on + strandat 3255.792 kb on + strandat 3255.821 kb on - strandat 3255.827 kb on - strandat 3255.832 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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3,252,734 + -0.4
3,252,734 + -0.8
3,252,735 - -1.0
3,252,743 + -1.4
3,252,744 - -0.2
3,253,128 + -0.2
3,253,128 + +0.0
3,253,136 + +1.6
3,253,137 - +1.3
3,253,137 - +1.0
3,253,140 + -0.5
3,253,141 - -1.0
3,253,154 + +0.3
3,253,163 + -0.3
3,253,184 + -0.5
3,253,223 - +0.2
3,253,308 + -0.7
3,253,371 + -0.1
3,253,371 + -0.0
3,253,371 + +0.3
3,253,513 + +0.8
3,253,526 - -0.7
3,253,615 + -1.8
3,253,620 + +1.0
3,253,676 - -0.3
3,253,684 + +0.1
3,253,685 - +1.2
3,253,775 - IAI46_15530 0.13 -2.1
3,253,775 - IAI46_15530 0.13 +1.6
3,253,786 - IAI46_15530 0.14 +0.1
3,253,793 + IAI46_15530 0.14 -0.1
3,253,795 + IAI46_15530 0.14 +0.6
3,253,796 - IAI46_15530 0.15 +1.5
3,253,832 - IAI46_15530 0.17 +0.6
3,254,019 - IAI46_15530 0.32 -0.4
3,254,063 + IAI46_15530 0.36 +0.5
3,254,064 - IAI46_15530 0.36 +0.6
3,254,096 - IAI46_15530 0.38 -0.8
3,254,108 - IAI46_15530 0.39 +0.3
3,254,108 - IAI46_15530 0.39 -0.9
3,254,120 + IAI46_15530 0.40 +0.8
3,254,121 - IAI46_15530 0.40 +0.0
3,254,121 - IAI46_15530 0.40 +0.0
3,254,121 - IAI46_15530 0.40 -1.9
3,254,121 - IAI46_15530 0.40 +0.4
3,254,121 - IAI46_15530 0.40 -0.5
3,254,122 + IAI46_15530 0.41 +0.5
3,254,122 + IAI46_15530 0.41 -0.3
3,254,123 - IAI46_15530 0.41 -0.0
3,254,123 - IAI46_15530 0.41 +0.1
3,254,157 - IAI46_15530 0.43 -1.4
3,254,345 + IAI46_15530 0.58 +0.0
3,254,418 - IAI46_15530 0.64 +0.3
3,254,522 - IAI46_15530 0.72 -0.1
3,254,605 + IAI46_15530 0.79 +0.7
3,254,671 + IAI46_15530 0.84 -1.4
3,254,753 - -0.1
3,254,790 + +1.2
3,254,832 + +0.7
3,254,867 + +0.5
3,254,895 + +2.0
3,254,973 + -0.4
3,254,973 + +1.0
3,254,974 - +0.5
3,254,974 - -1.0
3,254,996 - +0.9
3,255,003 + +1.2
3,255,004 - +0.5
3,255,073 + IAI46_15535 0.17 +0.6
3,255,073 + IAI46_15535 0.17 +1.2
3,255,074 - IAI46_15535 0.17 +1.1
3,255,120 - IAI46_15535 0.22 +0.2
3,255,120 - IAI46_15535 0.22 -0.7
3,255,120 - IAI46_15535 0.22 +0.5
3,255,169 + IAI46_15535 0.27 +1.5
3,255,170 - IAI46_15535 0.27 -0.6
3,255,284 - IAI46_15535 0.40 +1.7
3,255,284 - IAI46_15535 0.40 +0.7
3,255,284 - IAI46_15535 0.40 -0.0
3,255,338 - IAI46_15535 0.46 +0.8
3,255,364 - IAI46_15535 0.49 +0.4
3,255,414 + IAI46_15535 0.54 +0.8
3,255,417 + IAI46_15535 0.55 -0.5
3,255,418 - IAI46_15535 0.55 +0.1
3,255,418 - IAI46_15535 0.55 -0.1
3,255,451 + IAI46_15535 0.58 +0.7
3,255,494 - IAI46_15535 0.63 -1.4
3,255,532 - IAI46_15535 0.67 +0.3
3,255,558 + IAI46_15535 0.70 -0.1
3,255,589 + IAI46_15535 0.74 -0.2
3,255,630 + IAI46_15535 0.78 +0.2
3,255,631 - IAI46_15535 0.78 +0.2
3,255,634 + IAI46_15535 0.79 +0.2
3,255,634 + IAI46_15535 0.79 +0.3
3,255,635 - IAI46_15535 0.79 -0.5
3,255,752 + +0.3
3,255,752 + -0.3
3,255,792 + -0.2
3,255,821 - -1.1
3,255,827 - +0.1
3,255,832 + -0.1

Or see this region's nucleotide sequence