Strain Fitness in Serratia liquefaciens MT49 around IAI46_14740

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14730 and IAI46_14735 are separated by 129 nucleotidesIAI46_14735 and IAI46_14740 are separated by 27 nucleotidesIAI46_14740 and IAI46_14745 are separated by 154 nucleotidesIAI46_14745 and IAI46_14750 are separated by 83 nucleotides IAI46_14730: IAI46_14730 - hypothetical protein, at 3,121,003 to 3,121,251 _14730 IAI46_14735: IAI46_14735 - glutaredoxin 2, at 3,121,381 to 3,122,028 _14735 IAI46_14740: IAI46_14740 - phosphotransferase, at 3,122,056 to 3,123,696 _14740 IAI46_14745: IAI46_14745 - lipoprotein, at 3,123,851 to 3,124,414 _14745 IAI46_14750: IAI46_14750 - hypothetical protein, at 3,124,498 to 3,124,857 _14750 Position (kb) 3122 3123 3124Strain fitness (log2 ratio) -3 -2 -1 0 1at 3121.067 kb on - strand, within IAI46_14730at 3121.295 kb on + strandat 3121.334 kb on + strandat 3121.344 kb on + strandat 3121.348 kb on + strandat 3121.349 kb on - strandat 3121.552 kb on + strand, within IAI46_14735at 3121.570 kb on + strand, within IAI46_14735at 3121.572 kb on + strand, within IAI46_14735at 3121.666 kb on + strand, within IAI46_14735at 3121.668 kb on + strand, within IAI46_14735at 3121.669 kb on - strand, within IAI46_14735at 3121.669 kb on - strand, within IAI46_14735at 3121.669 kb on - strand, within IAI46_14735at 3121.669 kb on - strand, within IAI46_14735at 3121.669 kb on - strand, within IAI46_14735at 3121.679 kb on + strand, within IAI46_14735at 3121.746 kb on + strand, within IAI46_14735at 3121.896 kb on + strand, within IAI46_14735at 3121.896 kb on + strand, within IAI46_14735at 3121.945 kb on - strand, within IAI46_14735at 3121.980 kb on + strandat 3122.027 kb on - strandat 3122.044 kb on + strandat 3122.044 kb on + strandat 3122.044 kb on + strandat 3122.045 kb on - strandat 3122.047 kb on - strandat 3122.047 kb on - strandat 3122.047 kb on - strandat 3122.175 kb on - strandat 3122.511 kb on + strand, within IAI46_14740at 3122.569 kb on + strand, within IAI46_14740at 3122.570 kb on - strand, within IAI46_14740at 3122.840 kb on + strand, within IAI46_14740at 3122.841 kb on - strand, within IAI46_14740at 3122.909 kb on - strand, within IAI46_14740at 3122.909 kb on - strand, within IAI46_14740at 3122.936 kb on + strand, within IAI46_14740at 3122.936 kb on + strand, within IAI46_14740at 3122.937 kb on - strand, within IAI46_14740at 3123.324 kb on + strand, within IAI46_14740at 3123.324 kb on + strand, within IAI46_14740at 3123.353 kb on - strand, within IAI46_14740at 3123.550 kb on - strandat 3123.550 kb on - strandat 3123.721 kb on + strandat 3123.722 kb on - strandat 3123.743 kb on + strandat 3123.796 kb on + strandat 3123.835 kb on + strandat 3123.836 kb on - strandat 3123.926 kb on + strand, within IAI46_14745at 3124.036 kb on - strand, within IAI46_14745at 3124.163 kb on + strand, within IAI46_14745at 3124.164 kb on - strand, within IAI46_14745at 3124.214 kb on + strand, within IAI46_14745at 3124.214 kb on + strand, within IAI46_14745at 3124.333 kb on + strand, within IAI46_14745at 3124.396 kb on + strandat 3124.479 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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3,121,067 - IAI46_14730 0.26 +0.1
3,121,295 + +1.0
3,121,334 + -0.8
3,121,344 + -0.1
3,121,348 + -0.3
3,121,349 - -0.9
3,121,552 + IAI46_14735 0.26 -0.1
3,121,570 + IAI46_14735 0.29 +0.1
3,121,572 + IAI46_14735 0.29 -1.4
3,121,666 + IAI46_14735 0.44 +0.4
3,121,668 + IAI46_14735 0.44 +1.6
3,121,669 - IAI46_14735 0.44 +0.5
3,121,669 - IAI46_14735 0.44 -1.1
3,121,669 - IAI46_14735 0.44 -0.1
3,121,669 - IAI46_14735 0.44 -1.0
3,121,669 - IAI46_14735 0.44 +0.4
3,121,679 + IAI46_14735 0.46 -0.8
3,121,746 + IAI46_14735 0.56 -3.4
3,121,896 + IAI46_14735 0.79 +0.3
3,121,896 + IAI46_14735 0.79 +0.5
3,121,945 - IAI46_14735 0.87 +0.0
3,121,980 + -0.6
3,122,027 - +1.4
3,122,044 + -1.0
3,122,044 + +0.7
3,122,044 + -0.1
3,122,045 - +0.2
3,122,047 - -0.3
3,122,047 - +0.3
3,122,047 - -1.1
3,122,175 - -0.9
3,122,511 + IAI46_14740 0.28 -1.4
3,122,569 + IAI46_14740 0.31 +1.2
3,122,570 - IAI46_14740 0.31 -2.6
3,122,840 + IAI46_14740 0.48 -1.9
3,122,841 - IAI46_14740 0.48 -0.1
3,122,909 - IAI46_14740 0.52 -0.6
3,122,909 - IAI46_14740 0.52 -0.1
3,122,936 + IAI46_14740 0.54 +0.4
3,122,936 + IAI46_14740 0.54 +0.8
3,122,937 - IAI46_14740 0.54 -0.8
3,123,324 + IAI46_14740 0.77 -0.5
3,123,324 + IAI46_14740 0.77 +1.7
3,123,353 - IAI46_14740 0.79 -0.6
3,123,550 - -0.4
3,123,550 - -0.8
3,123,721 + -1.6
3,123,722 - +1.6
3,123,743 + +0.2
3,123,796 + +0.1
3,123,835 + -1.9
3,123,836 - -0.0
3,123,926 + IAI46_14745 0.13 -1.4
3,124,036 - IAI46_14745 0.33 +1.0
3,124,163 + IAI46_14745 0.55 +0.1
3,124,164 - IAI46_14745 0.55 +1.4
3,124,214 + IAI46_14745 0.64 -0.1
3,124,214 + IAI46_14745 0.64 +1.7
3,124,333 + IAI46_14745 0.85 -0.8
3,124,396 + -0.6
3,124,479 - +0.5

Or see this region's nucleotide sequence