Strain Fitness in Serratia liquefaciens MT49 around IAI46_14445

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14440 and IAI46_14445 are separated by 62 nucleotidesIAI46_14445 and IAI46_14450 are separated by 109 nucleotides IAI46_14440: IAI46_14440 - ABC transporter permease subunit, at 3,062,402 to 3,064,120 _14440 IAI46_14445: IAI46_14445 - 3'-5' exoribonuclease, at 3,064,183 to 3,064,743 _14445 IAI46_14450: IAI46_14450 - multidrug effflux MFS transporter, at 3,064,853 to 3,066,046 _14450 Position (kb) 3064 3065Strain fitness (log2 ratio) -2 -1 0 1at 3063.339 kb on + strand, within IAI46_14440at 3063.606 kb on + strand, within IAI46_14440at 3063.606 kb on + strand, within IAI46_14440at 3063.643 kb on + strand, within IAI46_14440at 3063.807 kb on - strand, within IAI46_14440at 3063.808 kb on + strand, within IAI46_14440at 3063.808 kb on + strand, within IAI46_14440at 3063.860 kb on + strand, within IAI46_14440at 3064.144 kb on - strandat 3064.147 kb on - strandat 3064.158 kb on + strandat 3064.220 kb on + strandat 3064.512 kb on + strand, within IAI46_14445at 3064.690 kb on + strandat 3064.928 kb on - strandat 3065.045 kb on + strand, within IAI46_14450at 3065.085 kb on - strand, within IAI46_14450at 3065.343 kb on + strand, within IAI46_14450at 3065.344 kb on - strand, within IAI46_14450at 3065.344 kb on - strand, within IAI46_14450at 3065.344 kb on - strand, within IAI46_14450at 3065.348 kb on + strand, within IAI46_14450at 3065.348 kb on + strand, within IAI46_14450at 3065.348 kb on + strand, within IAI46_14450at 3065.348 kb on + strand, within IAI46_14450at 3065.349 kb on - strand, within IAI46_14450at 3065.379 kb on + strand, within IAI46_14450at 3065.520 kb on - strand, within IAI46_14450at 3065.706 kb on + strand, within IAI46_14450at 3065.706 kb on + strand, within IAI46_14450at 3065.707 kb on - strand, within IAI46_14450

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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3,063,339 + IAI46_14440 0.55 +1.4
3,063,606 + IAI46_14440 0.70 -0.5
3,063,606 + IAI46_14440 0.70 +0.2
3,063,643 + IAI46_14440 0.72 -0.8
3,063,807 - IAI46_14440 0.82 -1.2
3,063,808 + IAI46_14440 0.82 +0.7
3,063,808 + IAI46_14440 0.82 -0.0
3,063,860 + IAI46_14440 0.85 +0.2
3,064,144 - -0.8
3,064,147 - +0.2
3,064,158 + +1.2
3,064,220 + -0.4
3,064,512 + IAI46_14445 0.59 -0.2
3,064,690 + -0.6
3,064,928 - -0.3
3,065,045 + IAI46_14450 0.16 -0.8
3,065,085 - IAI46_14450 0.19 +0.4
3,065,343 + IAI46_14450 0.41 -2.6
3,065,344 - IAI46_14450 0.41 +0.7
3,065,344 - IAI46_14450 0.41 +0.1
3,065,344 - IAI46_14450 0.41 -0.2
3,065,348 + IAI46_14450 0.41 +1.2
3,065,348 + IAI46_14450 0.41 -0.7
3,065,348 + IAI46_14450 0.41 -0.1
3,065,348 + IAI46_14450 0.41 -2.4
3,065,349 - IAI46_14450 0.42 +1.3
3,065,379 + IAI46_14450 0.44 -0.8
3,065,520 - IAI46_14450 0.56 -1.2
3,065,706 + IAI46_14450 0.71 -0.2
3,065,706 + IAI46_14450 0.71 +1.2
3,065,707 - IAI46_14450 0.72 -0.1

Or see this region's nucleotide sequence