Strain Fitness in Serratia liquefaciens MT49 around IAI46_14355

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14345 and IAI46_14350 are separated by 65 nucleotidesIAI46_14350 and IAI46_14355 are separated by 348 nucleotidesIAI46_14355 and IAI46_14360 are separated by 80 nucleotides IAI46_14345: IAI46_14345 - DUF1315 family protein, at 3,044,067 to 3,044,339 _14345 IAI46_14350: IAI46_14350 - peptide-methionine (R)-S-oxide reductase MsrB, at 3,044,405 to 3,044,818 _14350 IAI46_14355: IAI46_14355 - glyceraldehyde-3-phosphate dehydrogenase, at 3,045,167 to 3,046,162 _14355 IAI46_14360: IAI46_14360 - D-hexose-6-phosphate mutarotase, at 3,046,243 to 3,047,118 _14360 Position (kb) 3045 3046 3047Strain fitness (log2 ratio) -2 -1 0 1at 3044.296 kb on + strand, within IAI46_14345at 3044.353 kb on + strandat 3044.581 kb on - strand, within IAI46_14350at 3044.641 kb on - strand, within IAI46_14350at 3044.641 kb on - strand, within IAI46_14350at 3044.960 kb on - strandat 3046.291 kb on + strandat 3046.291 kb on + strandat 3046.292 kb on - strandat 3046.294 kb on - strandat 3046.350 kb on - strand, within IAI46_14360at 3046.725 kb on + strand, within IAI46_14360at 3046.726 kb on - strand, within IAI46_14360at 3046.726 kb on - strand, within IAI46_14360at 3046.726 kb on - strand, within IAI46_14360at 3046.726 kb on - strand, within IAI46_14360at 3046.726 kb on - strand, within IAI46_14360at 3046.730 kb on - strand, within IAI46_14360at 3046.759 kb on - strand, within IAI46_14360at 3046.763 kb on + strand, within IAI46_14360at 3046.784 kb on - strand, within IAI46_14360at 3046.786 kb on - strand, within IAI46_14360at 3046.889 kb on + strand, within IAI46_14360at 3046.967 kb on + strand, within IAI46_14360at 3047.009 kb on - strand, within IAI46_14360at 3047.162 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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3,044,296 + IAI46_14345 0.84 -0.5
3,044,353 + +1.3
3,044,581 - IAI46_14350 0.43 +0.8
3,044,641 - IAI46_14350 0.57 +0.0
3,044,641 - IAI46_14350 0.57 +0.6
3,044,960 - +0.6
3,046,291 + -1.0
3,046,291 + +0.0
3,046,292 - -0.7
3,046,294 - -2.7
3,046,350 - IAI46_14360 0.12 -0.9
3,046,725 + IAI46_14360 0.55 +0.1
3,046,726 - IAI46_14360 0.55 +1.4
3,046,726 - IAI46_14360 0.55 -1.2
3,046,726 - IAI46_14360 0.55 +0.4
3,046,726 - IAI46_14360 0.55 -0.4
3,046,726 - IAI46_14360 0.55 +0.0
3,046,730 - IAI46_14360 0.56 +0.2
3,046,759 - IAI46_14360 0.59 +1.6
3,046,763 + IAI46_14360 0.59 -1.9
3,046,784 - IAI46_14360 0.62 -0.9
3,046,786 - IAI46_14360 0.62 +0.2
3,046,889 + IAI46_14360 0.74 +1.4
3,046,967 + IAI46_14360 0.83 +0.3
3,047,009 - IAI46_14360 0.87 +0.1
3,047,162 - +0.5

Or see this region's nucleotide sequence