Strain Fitness in Serratia liquefaciens MT49 around IAI46_13605

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_13600 and IAI46_13605 are separated by 898 nucleotidesIAI46_13605 and IAI46_13610 are separated by 225 nucleotidesIAI46_13610 and IAI46_13615 are separated by 54 nucleotides IAI46_13600: IAI46_13600 - hypothetical protein, at 2,906,647 to 2,907,111 _13600 IAI46_13605: IAI46_13605 - hypothetical protein, at 2,908,010 to 2,908,579 _13605 IAI46_13610: IAI46_13610 - hypothetical protein, at 2,908,805 to 2,909,476 _13610 IAI46_13615: IAI46_13615 - Ig domain-containing protein, at 2,909,531 to 2,910,280 _13615 Position (kb) 2908 2909Strain fitness (log2 ratio) -2 -1 0 1 2at 2907.245 kb on - strandat 2907.255 kb on + strandat 2907.264 kb on + strandat 2907.265 kb on - strandat 2907.361 kb on - strandat 2907.364 kb on - strandat 2907.374 kb on + strandat 2907.374 kb on + strandat 2907.374 kb on + strandat 2907.382 kb on - strandat 2907.517 kb on + strandat 2907.517 kb on + strandat 2907.596 kb on - strandat 2907.596 kb on - strandat 2907.596 kb on - strandat 2907.597 kb on + strandat 2907.597 kb on + strandat 2907.597 kb on + strandat 2907.598 kb on - strandat 2907.614 kb on + strandat 2907.664 kb on - strandat 2907.686 kb on - strandat 2907.691 kb on + strandat 2907.692 kb on - strandat 2907.988 kb on + strandat 2908.018 kb on + strandat 2908.099 kb on + strand, within IAI46_13605at 2908.100 kb on - strand, within IAI46_13605at 2908.124 kb on + strand, within IAI46_13605at 2908.158 kb on - strand, within IAI46_13605at 2908.160 kb on + strand, within IAI46_13605at 2908.161 kb on - strand, within IAI46_13605at 2908.166 kb on + strand, within IAI46_13605at 2908.167 kb on - strand, within IAI46_13605at 2908.228 kb on - strand, within IAI46_13605at 2908.344 kb on + strand, within IAI46_13605at 2908.345 kb on - strand, within IAI46_13605at 2908.357 kb on - strand, within IAI46_13605at 2908.423 kb on - strand, within IAI46_13605at 2908.437 kb on + strand, within IAI46_13605at 2908.438 kb on - strand, within IAI46_13605at 2908.443 kb on + strand, within IAI46_13605at 2908.479 kb on - strand, within IAI46_13605at 2908.479 kb on - strand, within IAI46_13605at 2908.504 kb on + strand, within IAI46_13605at 2908.505 kb on - strand, within IAI46_13605at 2908.505 kb on - strand, within IAI46_13605at 2908.507 kb on + strand, within IAI46_13605at 2908.604 kb on + strandat 2908.604 kb on + strandat 2908.605 kb on - strandat 2908.605 kb on - strandat 2908.619 kb on + strandat 2908.619 kb on + strandat 2908.705 kb on + strandat 2908.720 kb on - strandat 2908.730 kb on + strandat 2908.732 kb on + strandat 2908.788 kb on + strandat 2908.789 kb on - strandat 2908.807 kb on - strandat 2908.853 kb on - strandat 2908.896 kb on + strand, within IAI46_13610at 2908.896 kb on + strand, within IAI46_13610at 2909.017 kb on - strand, within IAI46_13610at 2909.101 kb on + strand, within IAI46_13610at 2909.102 kb on - strand, within IAI46_13610at 2909.105 kb on - strand, within IAI46_13610at 2909.159 kb on - strand, within IAI46_13610at 2909.167 kb on + strand, within IAI46_13610at 2909.168 kb on - strand, within IAI46_13610at 2909.192 kb on - strand, within IAI46_13610at 2909.192 kb on - strand, within IAI46_13610at 2909.220 kb on - strand, within IAI46_13610at 2909.233 kb on - strand, within IAI46_13610at 2909.245 kb on + strand, within IAI46_13610at 2909.298 kb on + strand, within IAI46_13610at 2909.299 kb on - strand, within IAI46_13610at 2909.342 kb on - strand, within IAI46_13610at 2909.342 kb on - strand, within IAI46_13610at 2909.384 kb on + strand, within IAI46_13610at 2909.385 kb on - strand, within IAI46_13610at 2909.395 kb on + strand, within IAI46_13610at 2909.396 kb on - strand, within IAI46_13610at 2909.396 kb on - strand, within IAI46_13610at 2909.532 kb on + strandat 2909.532 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
remove
2,907,245 - -0.1
2,907,255 + -0.7
2,907,264 + +0.2
2,907,265 - -0.5
2,907,361 - +2.2
2,907,364 - -0.0
2,907,374 + -1.4
2,907,374 + -0.2
2,907,374 + +2.3
2,907,382 - +1.0
2,907,517 + +0.0
2,907,517 + +0.0
2,907,596 - -1.2
2,907,596 - -2.6
2,907,596 - -0.6
2,907,597 + -1.0
2,907,597 + -0.0
2,907,597 + -0.5
2,907,598 - -0.3
2,907,614 + +1.2
2,907,664 - +0.8
2,907,686 - +0.5
2,907,691 + +0.7
2,907,692 - -0.2
2,907,988 + -1.6
2,908,018 + -1.1
2,908,099 + IAI46_13605 0.16 +0.7
2,908,100 - IAI46_13605 0.16 +0.7
2,908,124 + IAI46_13605 0.20 -1.0
2,908,158 - IAI46_13605 0.26 +0.1
2,908,160 + IAI46_13605 0.26 +0.6
2,908,161 - IAI46_13605 0.26 -0.7
2,908,166 + IAI46_13605 0.27 +0.5
2,908,167 - IAI46_13605 0.28 +0.6
2,908,228 - IAI46_13605 0.38 +1.2
2,908,344 + IAI46_13605 0.59 +0.1
2,908,345 - IAI46_13605 0.59 +0.4
2,908,357 - IAI46_13605 0.61 -0.5
2,908,423 - IAI46_13605 0.72 -0.0
2,908,437 + IAI46_13605 0.75 +0.6
2,908,438 - IAI46_13605 0.75 +0.6
2,908,443 + IAI46_13605 0.76 +1.6
2,908,479 - IAI46_13605 0.82 -0.7
2,908,479 - IAI46_13605 0.82 +1.9
2,908,504 + IAI46_13605 0.87 -0.1
2,908,505 - IAI46_13605 0.87 +0.3
2,908,505 - IAI46_13605 0.87 -0.8
2,908,507 + IAI46_13605 0.87 -1.8
2,908,604 + +1.9
2,908,604 + -0.7
2,908,605 - -1.5
2,908,605 - -0.9
2,908,619 + -0.2
2,908,619 + +0.2
2,908,705 + +1.6
2,908,720 - -1.0
2,908,730 + -2.4
2,908,732 + +0.1
2,908,788 + +0.1
2,908,789 - +0.5
2,908,807 - +0.2
2,908,853 - +0.9
2,908,896 + IAI46_13610 0.14 -1.1
2,908,896 + IAI46_13610 0.14 -1.2
2,909,017 - IAI46_13610 0.32 +1.6
2,909,101 + IAI46_13610 0.44 -2.1
2,909,102 - IAI46_13610 0.44 -0.2
2,909,105 - IAI46_13610 0.45 +1.3
2,909,159 - IAI46_13610 0.53 +1.0
2,909,167 + IAI46_13610 0.54 -0.1
2,909,168 - IAI46_13610 0.54 +0.7
2,909,192 - IAI46_13610 0.58 -0.3
2,909,192 - IAI46_13610 0.58 +0.7
2,909,220 - IAI46_13610 0.62 +0.1
2,909,233 - IAI46_13610 0.64 +0.7
2,909,245 + IAI46_13610 0.65 +0.3
2,909,298 + IAI46_13610 0.73 +2.2
2,909,299 - IAI46_13610 0.74 +0.6
2,909,342 - IAI46_13610 0.80 +0.0
2,909,342 - IAI46_13610 0.80 +0.3
2,909,384 + IAI46_13610 0.86 -0.2
2,909,385 - IAI46_13610 0.86 +0.6
2,909,395 + IAI46_13610 0.88 +0.0
2,909,396 - IAI46_13610 0.88 +0.5
2,909,396 - IAI46_13610 0.88 +0.1
2,909,532 + +0.3
2,909,532 + -0.1

Or see this region's nucleotide sequence