Strain Fitness in Serratia liquefaciens MT49 around IAI46_13580

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13570 and IAI46_13575 overlap by 116 nucleotidesIAI46_13575 and IAI46_13580 are separated by 19 nucleotidesIAI46_13580 and IAI46_13585 are separated by 0 nucleotidesIAI46_13585 and IAI46_13590 are separated by 48 nucleotides IAI46_13570: IAI46_13570 - MoaD/ThiS family protein, at 2,899,037 to 2,901,532 _13570 IAI46_13575: IAI46_13575 - C40 family peptidase, at 2,901,417 to 2,901,884 _13575 IAI46_13580: IAI46_13580 - DUF1833 family protein, at 2,901,904 to 2,902,374 _13580 IAI46_13585: IAI46_13585 - hypothetical protein, at 2,902,375 to 2,902,842 _13585 IAI46_13590: IAI46_13590 - hypothetical protein, at 2,902,891 to 2,903,319 _13590 Position (kb) 2901 2902 2903Strain fitness (log2 ratio) -1 0 1 2at 2901.024 kb on + strand, within IAI46_13570at 2901.024 kb on + strand, within IAI46_13570at 2901.070 kb on + strand, within IAI46_13570at 2901.087 kb on - strand, within IAI46_13570at 2901.130 kb on - strand, within IAI46_13570at 2901.163 kb on + strand, within IAI46_13570at 2901.188 kb on - strand, within IAI46_13570at 2901.392 kb on - strandat 2901.392 kb on - strandat 2901.413 kb on + strandat 2901.431 kb on + strandat 2901.532 kb on + strandat 2901.538 kb on + strand, within IAI46_13575at 2901.539 kb on - strand, within IAI46_13575at 2901.668 kb on - strand, within IAI46_13575at 2901.681 kb on + strand, within IAI46_13575at 2901.734 kb on + strand, within IAI46_13575at 2901.734 kb on + strand, within IAI46_13575at 2901.735 kb on - strand, within IAI46_13575at 2901.766 kb on + strand, within IAI46_13575at 2901.766 kb on + strand, within IAI46_13575at 2901.783 kb on + strand, within IAI46_13575at 2901.783 kb on + strand, within IAI46_13575at 2901.812 kb on - strand, within IAI46_13575at 2901.861 kb on - strandat 2901.942 kb on - strandat 2902.054 kb on - strand, within IAI46_13580at 2902.082 kb on + strand, within IAI46_13580at 2902.082 kb on + strand, within IAI46_13580at 2902.233 kb on + strand, within IAI46_13580at 2902.235 kb on + strand, within IAI46_13580at 2902.236 kb on - strand, within IAI46_13580at 2902.236 kb on - strand, within IAI46_13580at 2902.289 kb on + strand, within IAI46_13580at 2902.289 kb on + strand, within IAI46_13580at 2902.307 kb on + strand, within IAI46_13580at 2902.435 kb on + strand, within IAI46_13585at 2902.475 kb on + strand, within IAI46_13585at 2902.537 kb on + strand, within IAI46_13585at 2902.665 kb on + strand, within IAI46_13585at 2902.834 kb on + strandat 2902.962 kb on - strand, within IAI46_13590at 2902.962 kb on - strand, within IAI46_13590at 2903.013 kb on - strand, within IAI46_13590at 2903.019 kb on + strand, within IAI46_13590at 2903.019 kb on + strand, within IAI46_13590at 2903.072 kb on + strand, within IAI46_13590at 2903.072 kb on + strand, within IAI46_13590at 2903.073 kb on - strand, within IAI46_13590at 2903.076 kb on - strand, within IAI46_13590at 2903.076 kb on - strand, within IAI46_13590at 2903.095 kb on - strand, within IAI46_13590at 2903.116 kb on - strand, within IAI46_13590at 2903.192 kb on - strand, within IAI46_13590at 2903.197 kb on + strand, within IAI46_13590at 2903.197 kb on + strand, within IAI46_13590at 2903.198 kb on - strand, within IAI46_13590at 2903.198 kb on - strand, within IAI46_13590at 2903.203 kb on - strand, within IAI46_13590at 2903.214 kb on + strand, within IAI46_13590at 2903.214 kb on + strand, within IAI46_13590at 2903.240 kb on + strand, within IAI46_13590at 2903.241 kb on - strand, within IAI46_13590at 2903.255 kb on + strand, within IAI46_13590at 2903.302 kb on - strandat 2903.302 kb on - strandat 2903.324 kb on - strandat 2903.354 kb on - strandat 2903.360 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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2,901,024 + IAI46_13570 0.80 +1.0
2,901,024 + IAI46_13570 0.80 +0.1
2,901,070 + IAI46_13570 0.81 +1.0
2,901,087 - IAI46_13570 0.82 +0.3
2,901,130 - IAI46_13570 0.84 -1.1
2,901,163 + IAI46_13570 0.85 +0.4
2,901,188 - IAI46_13570 0.86 +0.2
2,901,392 - -0.2
2,901,392 - -0.7
2,901,413 + -0.9
2,901,431 + -1.0
2,901,532 + +0.8
2,901,538 + IAI46_13575 0.26 +1.9
2,901,539 - IAI46_13575 0.26 +0.3
2,901,668 - IAI46_13575 0.54 +0.7
2,901,681 + IAI46_13575 0.56 +1.6
2,901,734 + IAI46_13575 0.68 +0.5
2,901,734 + IAI46_13575 0.68 -1.2
2,901,735 - IAI46_13575 0.68 +0.8
2,901,766 + IAI46_13575 0.75 +0.9
2,901,766 + IAI46_13575 0.75 +0.6
2,901,783 + IAI46_13575 0.78 -0.8
2,901,783 + IAI46_13575 0.78 +1.6
2,901,812 - IAI46_13575 0.84 +1.5
2,901,861 - -1.2
2,901,942 - -0.3
2,902,054 - IAI46_13580 0.32 +0.4
2,902,082 + IAI46_13580 0.38 -0.7
2,902,082 + IAI46_13580 0.38 +0.0
2,902,233 + IAI46_13580 0.70 -0.7
2,902,235 + IAI46_13580 0.70 +1.1
2,902,236 - IAI46_13580 0.70 +0.6
2,902,236 - IAI46_13580 0.70 -0.7
2,902,289 + IAI46_13580 0.82 -0.1
2,902,289 + IAI46_13580 0.82 +0.3
2,902,307 + IAI46_13580 0.86 +0.7
2,902,435 + IAI46_13585 0.13 +0.3
2,902,475 + IAI46_13585 0.21 +0.8
2,902,537 + IAI46_13585 0.35 -1.0
2,902,665 + IAI46_13585 0.62 +1.1
2,902,834 + +1.3
2,902,962 - IAI46_13590 0.17 +0.2
2,902,962 - IAI46_13590 0.17 -0.1
2,903,013 - IAI46_13590 0.28 +0.5
2,903,019 + IAI46_13590 0.30 -0.5
2,903,019 + IAI46_13590 0.30 -1.0
2,903,072 + IAI46_13590 0.42 +1.3
2,903,072 + IAI46_13590 0.42 +0.9
2,903,073 - IAI46_13590 0.42 -0.4
2,903,076 - IAI46_13590 0.43 +0.5
2,903,076 - IAI46_13590 0.43 +0.3
2,903,095 - IAI46_13590 0.48 +0.6
2,903,116 - IAI46_13590 0.52 -1.7
2,903,192 - IAI46_13590 0.70 -0.1
2,903,197 + IAI46_13590 0.71 -1.2
2,903,197 + IAI46_13590 0.71 -0.4
2,903,198 - IAI46_13590 0.72 -1.0
2,903,198 - IAI46_13590 0.72 +0.0
2,903,203 - IAI46_13590 0.73 -0.9
2,903,214 + IAI46_13590 0.75 -0.1
2,903,214 + IAI46_13590 0.75 -0.8
2,903,240 + IAI46_13590 0.81 -1.4
2,903,241 - IAI46_13590 0.82 -0.5
2,903,255 + IAI46_13590 0.85 +0.0
2,903,302 - -0.8
2,903,302 - -0.2
2,903,324 - +1.2
2,903,354 - -0.8
2,903,360 + -0.7

Or see this region's nucleotide sequence