Strain Fitness in Serratia liquefaciens MT49 around IAI46_13475

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13470 and IAI46_13475 are separated by 328 nucleotidesIAI46_13475 and IAI46_13480 overlap by 4 nucleotides IAI46_13470: IAI46_13470 - transcriptional regulator TyrR, at 2,877,212 to 2,878,783 _13470 IAI46_13475: IAI46_13475 - TIGR01620 family protein, at 2,879,112 to 2,880,173 _13475 IAI46_13480: IAI46_13480 - YcjX family protein, at 2,880,170 to 2,881,567 _13480 Position (kb) 2879 2880 2881Strain fitness (log2 ratio) -2 -1 0 1at 2878.291 kb on - strand, within IAI46_13470at 2878.291 kb on - strand, within IAI46_13470at 2878.390 kb on - strand, within IAI46_13470at 2878.492 kb on + strand, within IAI46_13470at 2878.493 kb on - strand, within IAI46_13470at 2878.665 kb on + strandat 2878.700 kb on + strandat 2878.787 kb on + strandat 2878.788 kb on - strandat 2878.833 kb on - strandat 2878.892 kb on + strandat 2878.948 kb on - strandat 2878.997 kb on + strandat 2878.997 kb on + strandat 2878.998 kb on - strandat 2878.999 kb on + strandat 2879.000 kb on - strandat 2879.434 kb on + strand, within IAI46_13475at 2879.435 kb on - strand, within IAI46_13475at 2879.745 kb on + strand, within IAI46_13475at 2879.746 kb on - strand, within IAI46_13475at 2879.898 kb on - strand, within IAI46_13475at 2879.898 kb on - strand, within IAI46_13475at 2879.898 kb on - strand, within IAI46_13475at 2879.911 kb on - strand, within IAI46_13475at 2879.926 kb on - strand, within IAI46_13475at 2880.181 kb on + strandat 2880.182 kb on - strandat 2880.220 kb on + strandat 2880.220 kb on + strandat 2880.220 kb on + strandat 2880.220 kb on + strandat 2880.221 kb on - strandat 2880.542 kb on - strand, within IAI46_13480at 2880.544 kb on + strand, within IAI46_13480at 2880.982 kb on - strand, within IAI46_13480at 2880.982 kb on - strand, within IAI46_13480at 2880.982 kb on - strand, within IAI46_13480at 2881.042 kb on + strand, within IAI46_13480at 2881.043 kb on - strand, within IAI46_13480at 2881.088 kb on + strand, within IAI46_13480at 2881.123 kb on - strand, within IAI46_13480at 2881.123 kb on - strand, within IAI46_13480at 2881.167 kb on + strand, within IAI46_13480

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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2,878,291 - IAI46_13470 0.69 +1.3
2,878,291 - IAI46_13470 0.69 -0.1
2,878,390 - IAI46_13470 0.75 +1.1
2,878,492 + IAI46_13470 0.81 +0.7
2,878,493 - IAI46_13470 0.81 -0.8
2,878,665 + -1.0
2,878,700 + -0.5
2,878,787 + -0.7
2,878,788 - +0.5
2,878,833 - -1.1
2,878,892 + -1.2
2,878,948 - -0.3
2,878,997 + -0.3
2,878,997 + -1.8
2,878,998 - +0.2
2,878,999 + -0.1
2,879,000 - +0.5
2,879,434 + IAI46_13475 0.30 +0.3
2,879,435 - IAI46_13475 0.30 +1.0
2,879,745 + IAI46_13475 0.60 -1.8
2,879,746 - IAI46_13475 0.60 -0.1
2,879,898 - IAI46_13475 0.74 +0.9
2,879,898 - IAI46_13475 0.74 -0.9
2,879,898 - IAI46_13475 0.74 -0.2
2,879,911 - IAI46_13475 0.75 +1.3
2,879,926 - IAI46_13475 0.77 -1.3
2,880,181 + -1.5
2,880,182 - -0.1
2,880,220 + +0.6
2,880,220 + +0.6
2,880,220 + -0.0
2,880,220 + +1.0
2,880,221 - -0.0
2,880,542 - IAI46_13480 0.27 +1.5
2,880,544 + IAI46_13480 0.27 +0.3
2,880,982 - IAI46_13480 0.58 -1.0
2,880,982 - IAI46_13480 0.58 +1.3
2,880,982 - IAI46_13480 0.58 -1.6
2,881,042 + IAI46_13480 0.62 -0.5
2,881,043 - IAI46_13480 0.62 +1.1
2,881,088 + IAI46_13480 0.66 -0.6
2,881,123 - IAI46_13480 0.68 -0.4
2,881,123 - IAI46_13480 0.68 +0.2
2,881,167 + IAI46_13480 0.71 +0.3

Or see this region's nucleotide sequence