Strain Fitness in Serratia liquefaciens MT49 around IAI46_12965

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12955 and IAI46_12960 are separated by 0 nucleotidesIAI46_12960 and IAI46_12965 are separated by 174 nucleotidesIAI46_12965 and IAI46_12970 are separated by 21 nucleotidesIAI46_12970 and IAI46_12975 are separated by 0 nucleotides IAI46_12955: IAI46_12955 - LysR family transcriptional regulator, at 2,763,616 to 2,764,551 _12955 IAI46_12960: IAI46_12960 - PTS transporter subunit EIIB, at 2,764,552 to 2,764,821 _12960 IAI46_12965: IAI46_12965 - hypothetical protein, at 2,764,996 to 2,765,169 _12965 IAI46_12970: IAI46_12970 - rhodanese-like domain-containing protein, at 2,765,191 to 2,765,517 _12970 IAI46_12975: IAI46_12975 - mechanosensitive ion channel family protein, at 2,765,518 to 2,767,944 _12975 Position (kb) 2764 2765 2766Strain fitness (log2 ratio) -2 -1 0 1 2at 2764.025 kb on + strand, within IAI46_12955at 2764.125 kb on + strand, within IAI46_12955at 2764.233 kb on + strand, within IAI46_12955at 2764.329 kb on - strand, within IAI46_12955at 2764.366 kb on + strand, within IAI46_12955at 2764.378 kb on - strand, within IAI46_12955at 2764.457 kb on - strand, within IAI46_12955at 2764.509 kb on - strandat 2764.549 kb on + strandat 2764.550 kb on - strandat 2764.553 kb on + strandat 2764.587 kb on - strand, within IAI46_12960at 2764.625 kb on + strand, within IAI46_12960at 2764.668 kb on + strand, within IAI46_12960at 2764.915 kb on + strandat 2764.915 kb on + strandat 2764.916 kb on - strandat 2764.916 kb on - strandat 2764.916 kb on - strandat 2764.919 kb on + strandat 2764.919 kb on + strandat 2764.951 kb on - strandat 2764.961 kb on + strandat 2764.975 kb on + strandat 2764.982 kb on - strandat 2764.982 kb on - strandat 2764.988 kb on + strandat 2765.110 kb on - strand, within IAI46_12965at 2765.200 kb on + strandat 2765.200 kb on + strandat 2765.201 kb on - strandat 2765.201 kb on - strandat 2765.322 kb on - strand, within IAI46_12970at 2765.476 kb on + strand, within IAI46_12970at 2765.510 kb on - strandat 2765.519 kb on + strandat 2765.519 kb on + strandat 2765.568 kb on + strandat 2765.765 kb on + strand, within IAI46_12975at 2765.874 kb on + strand, within IAI46_12975at 2765.893 kb on - strand, within IAI46_12975at 2765.905 kb on - strand, within IAI46_12975at 2766.000 kb on + strand, within IAI46_12975

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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2,764,025 + IAI46_12955 0.44 -0.2
2,764,125 + IAI46_12955 0.54 -0.1
2,764,233 + IAI46_12955 0.66 -0.0
2,764,329 - IAI46_12955 0.76 -0.1
2,764,366 + IAI46_12955 0.80 +0.0
2,764,378 - IAI46_12955 0.81 +0.4
2,764,457 - IAI46_12955 0.90 +0.3
2,764,509 - -0.2
2,764,549 + +0.3
2,764,550 - -2.0
2,764,553 + -1.3
2,764,587 - IAI46_12960 0.13 +0.3
2,764,625 + IAI46_12960 0.27 -1.3
2,764,668 + IAI46_12960 0.43 +0.8
2,764,915 + +0.6
2,764,915 + -0.3
2,764,916 - +1.0
2,764,916 - +1.3
2,764,916 - -0.6
2,764,919 + -0.0
2,764,919 + +0.2
2,764,951 - -1.9
2,764,961 + -0.3
2,764,975 + +0.3
2,764,982 - +0.3
2,764,982 - +1.1
2,764,988 + -0.7
2,765,110 - IAI46_12965 0.66 +0.3
2,765,200 + +0.2
2,765,200 + +1.3
2,765,201 - +0.9
2,765,201 - +0.5
2,765,322 - IAI46_12970 0.40 +1.3
2,765,476 + IAI46_12970 0.87 -0.3
2,765,510 - +0.6
2,765,519 + -0.2
2,765,519 + -0.5
2,765,568 + +0.1
2,765,765 + IAI46_12975 0.10 -1.3
2,765,874 + IAI46_12975 0.15 +1.8
2,765,893 - IAI46_12975 0.15 +0.3
2,765,905 - IAI46_12975 0.16 +0.7
2,766,000 + IAI46_12975 0.20 +1.3

Or see this region's nucleotide sequence