Strain Fitness in Serratia liquefaciens MT49 around IAI46_12380

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_12375 and IAI46_12380 are separated by 48 nucleotidesIAI46_12380 and IAI46_12385 overlap by 23 nucleotidesIAI46_12385 and IAI46_12390 are separated by 133 nucleotides IAI46_12375: IAI46_12375 - alpha/beta fold hydrolase, at 2,628,616 to 2,629,680 _12375 IAI46_12380: IAI46_12380 - carboxymuconolactone decarboxylase family protein, at 2,629,729 to 2,630,493 _12380 IAI46_12385: IAI46_12385 - cupin domain-containing protein, at 2,630,471 to 2,630,950 _12385 IAI46_12390: IAI46_12390 - heavy metal response regulator transcription factor, at 2,631,084 to 2,631,761 _12390 Position (kb) 2629 2630 2631Strain fitness (log2 ratio) -2 -1 0 1 2at 2628.925 kb on - strand, within IAI46_12375at 2628.952 kb on + strand, within IAI46_12375at 2629.175 kb on - strand, within IAI46_12375at 2629.185 kb on + strand, within IAI46_12375at 2629.186 kb on - strand, within IAI46_12375at 2629.334 kb on + strand, within IAI46_12375at 2629.335 kb on - strand, within IAI46_12375at 2629.500 kb on - strand, within IAI46_12375at 2629.500 kb on - strand, within IAI46_12375at 2629.615 kb on - strandat 2629.670 kb on - strandat 2629.699 kb on + strandat 2629.847 kb on - strand, within IAI46_12380at 2629.867 kb on - strand, within IAI46_12380at 2629.976 kb on - strand, within IAI46_12380at 2630.304 kb on + strand, within IAI46_12380at 2630.635 kb on + strand, within IAI46_12385at 2630.765 kb on - strand, within IAI46_12385at 2630.908 kb on + strandat 2630.909 kb on - strandat 2630.909 kb on - strandat 2630.945 kb on + strandat 2630.951 kb on - strandat 2630.959 kb on - strandat 2631.104 kb on + strandat 2631.105 kb on - strandat 2631.305 kb on + strand, within IAI46_12390at 2631.323 kb on + strand, within IAI46_12390at 2631.359 kb on + strand, within IAI46_12390at 2631.386 kb on + strand, within IAI46_12390at 2631.390 kb on - strand, within IAI46_12390at 2631.420 kb on + strand, within IAI46_12390at 2631.472 kb on + strand, within IAI46_12390

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
remove
2,628,925 - IAI46_12375 0.29 -0.1
2,628,952 + IAI46_12375 0.32 -0.6
2,629,175 - IAI46_12375 0.52 +0.1
2,629,185 + IAI46_12375 0.53 -0.7
2,629,186 - IAI46_12375 0.54 +1.0
2,629,334 + IAI46_12375 0.67 +1.5
2,629,335 - IAI46_12375 0.68 -1.3
2,629,500 - IAI46_12375 0.83 +2.1
2,629,500 - IAI46_12375 0.83 -1.1
2,629,615 - +0.6
2,629,670 - +0.6
2,629,699 + +1.3
2,629,847 - IAI46_12380 0.15 +0.8
2,629,867 - IAI46_12380 0.18 -0.3
2,629,976 - IAI46_12380 0.32 -1.0
2,630,304 + IAI46_12380 0.75 -0.3
2,630,635 + IAI46_12385 0.34 -0.6
2,630,765 - IAI46_12385 0.61 +0.2
2,630,908 + -0.7
2,630,909 - -0.4
2,630,909 - -1.4
2,630,945 + -0.4
2,630,951 - -0.7
2,630,959 - +0.5
2,631,104 + +0.7
2,631,105 - -1.7
2,631,305 + IAI46_12390 0.33 +1.3
2,631,323 + IAI46_12390 0.35 -1.0
2,631,359 + IAI46_12390 0.41 -1.9
2,631,386 + IAI46_12390 0.45 +0.3
2,631,390 - IAI46_12390 0.45 +1.6
2,631,420 + IAI46_12390 0.50 -1.1
2,631,472 + IAI46_12390 0.57 +1.1

Or see this region's nucleotide sequence