Strain Fitness in Serratia liquefaciens MT49 around IAI46_12370

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12365 and IAI46_12370 are separated by 46 nucleotidesIAI46_12370 and IAI46_12375 are separated by 126 nucleotides IAI46_12365: IAI46_12365 - LysR family transcriptional regulator, at 2,626,704 to 2,627,591 _12365 IAI46_12370: IAI46_12370 - aldo/keto reductase, at 2,627,638 to 2,628,489 _12370 IAI46_12375: IAI46_12375 - alpha/beta fold hydrolase, at 2,628,616 to 2,629,680 _12375 Position (kb) 2627 2628 2629Strain fitness (log2 ratio) -1 0 1 2at 2626.662 kb on + strandat 2626.668 kb on + strandat 2626.840 kb on + strand, within IAI46_12365at 2626.841 kb on - strand, within IAI46_12365at 2626.845 kb on - strand, within IAI46_12365at 2627.062 kb on - strand, within IAI46_12365at 2627.160 kb on - strand, within IAI46_12365at 2627.312 kb on - strand, within IAI46_12365at 2627.378 kb on + strand, within IAI46_12365at 2627.445 kb on - strand, within IAI46_12365at 2627.520 kb on + strandat 2627.521 kb on - strandat 2627.527 kb on - strandat 2627.868 kb on + strand, within IAI46_12370at 2628.121 kb on + strand, within IAI46_12370at 2628.179 kb on + strand, within IAI46_12370at 2628.179 kb on + strand, within IAI46_12370at 2628.180 kb on - strand, within IAI46_12370at 2628.191 kb on + strand, within IAI46_12370at 2628.191 kb on + strand, within IAI46_12370at 2628.211 kb on + strand, within IAI46_12370at 2628.246 kb on - strand, within IAI46_12370at 2628.246 kb on - strand, within IAI46_12370at 2628.278 kb on - strand, within IAI46_12370at 2628.344 kb on + strand, within IAI46_12370at 2628.524 kb on + strandat 2628.618 kb on - strandat 2628.699 kb on + strandat 2628.700 kb on - strandat 2628.700 kb on - strandat 2628.925 kb on - strand, within IAI46_12375at 2628.952 kb on + strand, within IAI46_12375at 2629.175 kb on - strand, within IAI46_12375at 2629.185 kb on + strand, within IAI46_12375at 2629.186 kb on - strand, within IAI46_12375at 2629.334 kb on + strand, within IAI46_12375at 2629.335 kb on - strand, within IAI46_12375

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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2,626,662 + +1.4
2,626,668 + +0.7
2,626,840 + IAI46_12365 0.15 +0.0
2,626,841 - IAI46_12365 0.15 -0.7
2,626,845 - IAI46_12365 0.16 -0.6
2,627,062 - IAI46_12365 0.40 +0.2
2,627,160 - IAI46_12365 0.51 -0.3
2,627,312 - IAI46_12365 0.68 +1.6
2,627,378 + IAI46_12365 0.76 -0.6
2,627,445 - IAI46_12365 0.83 +0.5
2,627,520 + +0.8
2,627,521 - +1.3
2,627,527 - -0.0
2,627,868 + IAI46_12370 0.27 -0.3
2,628,121 + IAI46_12370 0.57 +1.1
2,628,179 + IAI46_12370 0.63 -0.2
2,628,179 + IAI46_12370 0.63 +0.4
2,628,180 - IAI46_12370 0.64 +0.2
2,628,191 + IAI46_12370 0.65 -1.1
2,628,191 + IAI46_12370 0.65 -0.7
2,628,211 + IAI46_12370 0.67 +0.5
2,628,246 - IAI46_12370 0.71 +2.3
2,628,246 - IAI46_12370 0.71 -0.7
2,628,278 - IAI46_12370 0.75 -0.1
2,628,344 + IAI46_12370 0.83 -0.1
2,628,524 + -0.9
2,628,618 - -0.0
2,628,699 + -0.7
2,628,700 - -0.2
2,628,700 - +0.3
2,628,925 - IAI46_12375 0.29 -0.1
2,628,952 + IAI46_12375 0.32 -0.6
2,629,175 - IAI46_12375 0.52 +0.1
2,629,185 + IAI46_12375 0.53 -0.7
2,629,186 - IAI46_12375 0.54 +1.0
2,629,334 + IAI46_12375 0.67 +1.5
2,629,335 - IAI46_12375 0.68 -1.3

Or see this region's nucleotide sequence