Strain Fitness in Serratia liquefaciens MT49 around IAI46_11525

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11520 and IAI46_11525 are separated by 104 nucleotidesIAI46_11525 and IAI46_11530 are separated by 81 nucleotides IAI46_11520: IAI46_11520 - L-arabinose ABC transporter permease AraH, at 2,432,727 to 2,433,710 _11520 IAI46_11525: IAI46_11525 - arabinose operon transcriptional regulator AraC, at 2,433,815 to 2,434,732 _11525 IAI46_11530: IAI46_11530 - oxidoreductase, at 2,434,814 to 2,435,854 _11530 Position (kb) 2433 2434 2435Strain fitness (log2 ratio) -2 -1 0 1at 2433.015 kb on - strand, within IAI46_11520at 2433.162 kb on + strand, within IAI46_11520at 2433.163 kb on - strand, within IAI46_11520at 2433.223 kb on - strand, within IAI46_11520at 2433.265 kb on + strand, within IAI46_11520at 2433.300 kb on - strand, within IAI46_11520at 2433.321 kb on - strand, within IAI46_11520at 2433.376 kb on + strand, within IAI46_11520at 2433.377 kb on - strand, within IAI46_11520at 2433.449 kb on + strand, within IAI46_11520at 2433.449 kb on + strand, within IAI46_11520at 2433.633 kb on + strandat 2433.633 kb on + strandat 2433.681 kb on + strandat 2433.772 kb on - strandat 2433.786 kb on + strandat 2433.787 kb on - strandat 2433.818 kb on + strandat 2433.882 kb on - strandat 2433.964 kb on + strand, within IAI46_11525at 2434.023 kb on - strand, within IAI46_11525at 2434.070 kb on + strand, within IAI46_11525at 2434.070 kb on + strand, within IAI46_11525at 2434.071 kb on - strand, within IAI46_11525at 2434.071 kb on - strand, within IAI46_11525at 2434.074 kb on - strand, within IAI46_11525at 2434.210 kb on - strand, within IAI46_11525at 2434.371 kb on + strand, within IAI46_11525at 2434.496 kb on - strand, within IAI46_11525at 2434.620 kb on + strand, within IAI46_11525at 2434.667 kb on - strandat 2434.682 kb on + strandat 2434.713 kb on - strandat 2434.713 kb on - strandat 2434.713 kb on - strandat 2434.742 kb on + strandat 2434.801 kb on - strandat 2435.026 kb on + strand, within IAI46_11530at 2435.027 kb on - strand, within IAI46_11530at 2435.027 kb on - strand, within IAI46_11530at 2435.457 kb on + strand, within IAI46_11530at 2435.457 kb on + strand, within IAI46_11530at 2435.494 kb on + strand, within IAI46_11530at 2435.494 kb on + strand, within IAI46_11530at 2435.494 kb on + strand, within IAI46_11530at 2435.528 kb on - strand, within IAI46_11530at 2435.717 kb on + strand, within IAI46_11530at 2435.717 kb on + strand, within IAI46_11530

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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2,433,015 - IAI46_11520 0.29 -0.8
2,433,162 + IAI46_11520 0.44 +1.2
2,433,163 - IAI46_11520 0.44 +0.4
2,433,223 - IAI46_11520 0.50 -0.5
2,433,265 + IAI46_11520 0.55 -2.1
2,433,300 - IAI46_11520 0.58 +1.1
2,433,321 - IAI46_11520 0.60 -1.3
2,433,376 + IAI46_11520 0.66 -0.6
2,433,377 - IAI46_11520 0.66 -1.0
2,433,449 + IAI46_11520 0.73 +1.6
2,433,449 + IAI46_11520 0.73 -0.3
2,433,633 + +0.4
2,433,633 + +0.6
2,433,681 + +0.4
2,433,772 - -0.9
2,433,786 + -0.5
2,433,787 - -1.2
2,433,818 + +0.7
2,433,882 - +1.1
2,433,964 + IAI46_11525 0.16 +0.1
2,434,023 - IAI46_11525 0.23 +0.9
2,434,070 + IAI46_11525 0.28 +1.5
2,434,070 + IAI46_11525 0.28 +1.1
2,434,071 - IAI46_11525 0.28 -0.3
2,434,071 - IAI46_11525 0.28 +1.1
2,434,074 - IAI46_11525 0.28 +0.4
2,434,210 - IAI46_11525 0.43 -1.7
2,434,371 + IAI46_11525 0.61 +0.3
2,434,496 - IAI46_11525 0.74 +1.3
2,434,620 + IAI46_11525 0.88 +0.5
2,434,667 - -1.0
2,434,682 + +1.1
2,434,713 - +0.7
2,434,713 - -0.2
2,434,713 - +0.1
2,434,742 + +0.0
2,434,801 - -0.4
2,435,026 + IAI46_11530 0.20 +0.2
2,435,027 - IAI46_11530 0.20 +0.2
2,435,027 - IAI46_11530 0.20 +1.2
2,435,457 + IAI46_11530 0.62 +0.0
2,435,457 + IAI46_11530 0.62 -1.2
2,435,494 + IAI46_11530 0.65 +0.8
2,435,494 + IAI46_11530 0.65 -0.2
2,435,494 + IAI46_11530 0.65 +0.3
2,435,528 - IAI46_11530 0.69 -1.4
2,435,717 + IAI46_11530 0.87 -1.3
2,435,717 + IAI46_11530 0.87 +0.4

Or see this region's nucleotide sequence