Strain Fitness in Serratia liquefaciens MT49 around IAI46_11440

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11435 and IAI46_11440 are separated by 112 nucleotidesIAI46_11440 and IAI46_11445 are separated by 158 nucleotides IAI46_11435: IAI46_11435 - benzoate/H(+) symporter BenE family transporter, at 2,411,469 to 2,412,662 _11435 IAI46_11440: IAI46_11440 - helix-turn-helix transcriptional regulator, at 2,412,775 to 2,413,338 _11440 IAI46_11445: IAI46_11445 - S9 family peptidase, at 2,413,497 to 2,415,587 _11445 Position (kb) 2412 2413 2414Strain fitness (log2 ratio) -2 -1 0 1 2at 2411.787 kb on - strand, within IAI46_11435at 2411.788 kb on + strand, within IAI46_11435at 2411.788 kb on + strand, within IAI46_11435at 2411.788 kb on + strand, within IAI46_11435at 2411.852 kb on + strand, within IAI46_11435at 2411.910 kb on - strand, within IAI46_11435at 2411.910 kb on - strand, within IAI46_11435at 2412.033 kb on - strand, within IAI46_11435at 2412.033 kb on - strand, within IAI46_11435at 2412.172 kb on - strand, within IAI46_11435at 2412.179 kb on - strand, within IAI46_11435at 2412.179 kb on - strand, within IAI46_11435at 2412.219 kb on + strand, within IAI46_11435at 2412.295 kb on + strand, within IAI46_11435at 2412.296 kb on - strand, within IAI46_11435at 2412.567 kb on - strandat 2412.714 kb on + strandat 2412.714 kb on + strandat 2412.727 kb on + strandat 2412.728 kb on - strandat 2413.016 kb on - strand, within IAI46_11440at 2413.042 kb on + strand, within IAI46_11440at 2413.276 kb on + strand, within IAI46_11440at 2413.302 kb on - strandat 2413.409 kb on - strandat 2413.460 kb on + strandat 2413.741 kb on - strand, within IAI46_11445at 2413.743 kb on + strand, within IAI46_11445at 2413.746 kb on + strand, within IAI46_11445at 2413.746 kb on + strand, within IAI46_11445at 2413.747 kb on - strand, within IAI46_11445at 2413.847 kb on + strand, within IAI46_11445at 2413.849 kb on + strand, within IAI46_11445at 2414.112 kb on + strand, within IAI46_11445at 2414.173 kb on - strand, within IAI46_11445at 2414.173 kb on - strand, within IAI46_11445at 2414.200 kb on + strand, within IAI46_11445at 2414.200 kb on + strand, within IAI46_11445at 2414.201 kb on - strand, within IAI46_11445at 2414.202 kb on + strand, within IAI46_11445at 2414.202 kb on + strand, within IAI46_11445at 2414.202 kb on + strand, within IAI46_11445at 2414.202 kb on + strand, within IAI46_11445at 2414.202 kb on + strand, within IAI46_11445at 2414.203 kb on - strand, within IAI46_11445at 2414.203 kb on - strand, within IAI46_11445at 2414.203 kb on - strand, within IAI46_11445at 2414.203 kb on - strand, within IAI46_11445at 2414.219 kb on + strand, within IAI46_11445at 2414.241 kb on + strand, within IAI46_11445at 2414.242 kb on - strand, within IAI46_11445at 2414.280 kb on + strand, within IAI46_11445

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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2,411,787 - IAI46_11435 0.27 +1.0
2,411,788 + IAI46_11435 0.27 -2.2
2,411,788 + IAI46_11435 0.27 -0.2
2,411,788 + IAI46_11435 0.27 -1.3
2,411,852 + IAI46_11435 0.32 -0.5
2,411,910 - IAI46_11435 0.37 +0.8
2,411,910 - IAI46_11435 0.37 -1.0
2,412,033 - IAI46_11435 0.47 -1.0
2,412,033 - IAI46_11435 0.47 +0.5
2,412,172 - IAI46_11435 0.59 +0.6
2,412,179 - IAI46_11435 0.59 -0.1
2,412,179 - IAI46_11435 0.59 -1.3
2,412,219 + IAI46_11435 0.63 +2.0
2,412,295 + IAI46_11435 0.69 -0.3
2,412,296 - IAI46_11435 0.69 +0.0
2,412,567 - -0.4
2,412,714 + +0.1
2,412,714 + +0.5
2,412,727 + -0.3
2,412,728 - +0.9
2,413,016 - IAI46_11440 0.43 +0.3
2,413,042 + IAI46_11440 0.47 -2.1
2,413,276 + IAI46_11440 0.89 -1.1
2,413,302 - -1.4
2,413,409 - -0.5
2,413,460 + -0.1
2,413,741 - IAI46_11445 0.12 -1.0
2,413,743 + IAI46_11445 0.12 -0.9
2,413,746 + IAI46_11445 0.12 +0.8
2,413,746 + IAI46_11445 0.12 +0.2
2,413,747 - IAI46_11445 0.12 +1.3
2,413,847 + IAI46_11445 0.17 -0.2
2,413,849 + IAI46_11445 0.17 -0.7
2,414,112 + IAI46_11445 0.29 -0.4
2,414,173 - IAI46_11445 0.32 -0.4
2,414,173 - IAI46_11445 0.32 +0.0
2,414,200 + IAI46_11445 0.34 -0.3
2,414,200 + IAI46_11445 0.34 +0.7
2,414,201 - IAI46_11445 0.34 -1.1
2,414,202 + IAI46_11445 0.34 -1.1
2,414,202 + IAI46_11445 0.34 -1.0
2,414,202 + IAI46_11445 0.34 +1.2
2,414,202 + IAI46_11445 0.34 -0.4
2,414,202 + IAI46_11445 0.34 +1.5
2,414,203 - IAI46_11445 0.34 -0.6
2,414,203 - IAI46_11445 0.34 +0.6
2,414,203 - IAI46_11445 0.34 +1.0
2,414,203 - IAI46_11445 0.34 +1.4
2,414,219 + IAI46_11445 0.35 +0.6
2,414,241 + IAI46_11445 0.36 +1.7
2,414,242 - IAI46_11445 0.36 -0.5
2,414,280 + IAI46_11445 0.37 +1.9

Or see this region's nucleotide sequence