Strain Fitness in Serratia liquefaciens MT49 around IAI46_10805

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10800 and IAI46_10805 are separated by 99 nucleotidesIAI46_10805 and IAI46_10810 are separated by 406 nucleotides IAI46_10800: IAI46_10800 - carboxy terminal-processing peptidase, at 2,282,892 to 2,284,928 _10800 IAI46_10805: IAI46_10805 - DUF4260 domain-containing protein, at 2,285,028 to 2,285,411 _10805 IAI46_10810: IAI46_10810 - protease HtpX, at 2,285,818 to 2,286,696 _10810 Position (kb) 2285 2286Strain fitness (log2 ratio) -1 0 1 2 3 4at 2284.102 kb on + strand, within IAI46_10800at 2284.147 kb on + strand, within IAI46_10800at 2284.147 kb on + strand, within IAI46_10800at 2284.203 kb on + strand, within IAI46_10800at 2284.204 kb on - strand, within IAI46_10800at 2284.360 kb on - strand, within IAI46_10800at 2284.407 kb on + strand, within IAI46_10800at 2284.408 kb on - strand, within IAI46_10800at 2284.547 kb on + strand, within IAI46_10800at 2284.547 kb on + strand, within IAI46_10800at 2284.548 kb on - strand, within IAI46_10800at 2284.551 kb on - strand, within IAI46_10800at 2284.564 kb on - strand, within IAI46_10800at 2284.674 kb on + strand, within IAI46_10800at 2284.772 kb on + strandat 2285.038 kb on + strandat 2285.039 kb on - strandat 2285.059 kb on + strandat 2285.089 kb on + strand, within IAI46_10805at 2285.089 kb on + strand, within IAI46_10805at 2285.104 kb on + strand, within IAI46_10805at 2285.104 kb on + strand, within IAI46_10805at 2285.104 kb on + strand, within IAI46_10805at 2285.105 kb on - strand, within IAI46_10805at 2285.106 kb on + strand, within IAI46_10805at 2285.106 kb on + strand, within IAI46_10805at 2285.107 kb on - strand, within IAI46_10805at 2285.121 kb on + strand, within IAI46_10805at 2285.179 kb on - strand, within IAI46_10805at 2285.183 kb on - strand, within IAI46_10805at 2285.183 kb on - strand, within IAI46_10805at 2285.183 kb on - strand, within IAI46_10805at 2285.229 kb on + strand, within IAI46_10805at 2285.229 kb on + strand, within IAI46_10805at 2285.229 kb on + strand, within IAI46_10805at 2285.230 kb on - strand, within IAI46_10805at 2285.257 kb on + strand, within IAI46_10805at 2285.443 kb on + strandat 2285.444 kb on - strandat 2285.496 kb on - strandat 2285.798 kb on + strandat 2285.817 kb on + strandat 2285.826 kb on + strandat 2285.828 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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2,284,102 + IAI46_10800 0.59 +0.6
2,284,147 + IAI46_10800 0.62 +0.7
2,284,147 + IAI46_10800 0.62 +1.3
2,284,203 + IAI46_10800 0.64 +0.2
2,284,204 - IAI46_10800 0.64 -0.2
2,284,360 - IAI46_10800 0.72 +1.4
2,284,407 + IAI46_10800 0.74 -0.3
2,284,408 - IAI46_10800 0.74 +0.4
2,284,547 + IAI46_10800 0.81 -0.1
2,284,547 + IAI46_10800 0.81 +1.2
2,284,548 - IAI46_10800 0.81 +0.4
2,284,551 - IAI46_10800 0.81 +3.9
2,284,564 - IAI46_10800 0.82 +1.8
2,284,674 + IAI46_10800 0.87 -0.0
2,284,772 + +0.2
2,285,038 + -0.4
2,285,039 - +1.0
2,285,059 + +0.4
2,285,089 + IAI46_10805 0.16 -1.1
2,285,089 + IAI46_10805 0.16 +0.2
2,285,104 + IAI46_10805 0.20 +0.8
2,285,104 + IAI46_10805 0.20 +1.0
2,285,104 + IAI46_10805 0.20 +0.3
2,285,105 - IAI46_10805 0.20 +0.3
2,285,106 + IAI46_10805 0.20 +0.2
2,285,106 + IAI46_10805 0.20 +0.7
2,285,107 - IAI46_10805 0.21 -0.0
2,285,121 + IAI46_10805 0.24 -0.2
2,285,179 - IAI46_10805 0.39 -0.5
2,285,183 - IAI46_10805 0.40 +0.8
2,285,183 - IAI46_10805 0.40 +0.1
2,285,183 - IAI46_10805 0.40 +0.1
2,285,229 + IAI46_10805 0.52 +0.5
2,285,229 + IAI46_10805 0.52 -0.2
2,285,229 + IAI46_10805 0.52 +0.8
2,285,230 - IAI46_10805 0.53 +0.1
2,285,257 + IAI46_10805 0.60 +0.4
2,285,443 + +0.7
2,285,444 - +0.9
2,285,496 - -0.7
2,285,798 + -0.7
2,285,817 + -1.2
2,285,826 + +1.1
2,285,828 + +0.1

Or see this region's nucleotide sequence