Strain Fitness in Serratia liquefaciens MT49 around IAI46_10770

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10760 and IAI46_10765 are separated by 5 nucleotidesIAI46_10765 and IAI46_10770 are separated by 2 nucleotidesIAI46_10770 and IAI46_10775 are separated by 279 nucleotides IAI46_10760: IAI46_10760 - spore coat protein U domain-containing protein, at 2,274,059 to 2,274,607 _10760 IAI46_10765: IAI46_10765 - spore coat protein U domain-containing protein, at 2,274,613 to 2,275,116 _10765 IAI46_10770: IAI46_10770 - spore coat protein U domain-containing protein, at 2,275,119 to 2,275,658 _10770 IAI46_10775: IAI46_10775 - 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF, at 2,275,938 to 2,277,374 _10775 Position (kb) 2275 2276Strain fitness (log2 ratio) -2 -1 0 1 2at 2274.227 kb on - strand, within IAI46_10760at 2274.227 kb on - strand, within IAI46_10760at 2274.298 kb on + strand, within IAI46_10760at 2274.481 kb on + strand, within IAI46_10760at 2274.511 kb on + strand, within IAI46_10760at 2274.601 kb on + strandat 2274.602 kb on - strandat 2274.614 kb on + strandat 2274.689 kb on + strand, within IAI46_10765at 2274.689 kb on + strand, within IAI46_10765at 2274.690 kb on - strand, within IAI46_10765at 2274.774 kb on + strand, within IAI46_10765at 2274.775 kb on - strand, within IAI46_10765at 2274.775 kb on - strand, within IAI46_10765at 2274.777 kb on - strand, within IAI46_10765at 2274.777 kb on - strand, within IAI46_10765at 2274.777 kb on - strand, within IAI46_10765at 2274.786 kb on - strand, within IAI46_10765at 2274.867 kb on - strand, within IAI46_10765at 2274.936 kb on + strand, within IAI46_10765at 2274.955 kb on - strand, within IAI46_10765at 2275.153 kb on + strandat 2275.153 kb on + strandat 2275.153 kb on + strandat 2275.153 kb on + strandat 2275.153 kb on + strandat 2275.154 kb on - strandat 2275.154 kb on - strandat 2275.198 kb on + strand, within IAI46_10770at 2275.206 kb on + strand, within IAI46_10770at 2275.297 kb on + strand, within IAI46_10770at 2275.350 kb on + strand, within IAI46_10770at 2275.350 kb on + strand, within IAI46_10770at 2275.351 kb on - strand, within IAI46_10770at 2275.381 kb on + strand, within IAI46_10770at 2275.382 kb on - strand, within IAI46_10770at 2275.452 kb on - strand, within IAI46_10770at 2275.452 kb on - strand, within IAI46_10770at 2275.472 kb on - strand, within IAI46_10770at 2275.534 kb on - strand, within IAI46_10770at 2275.534 kb on - strand, within IAI46_10770at 2275.662 kb on - strandat 2275.716 kb on + strandat 2275.734 kb on + strandat 2275.742 kb on - strandat 2275.817 kb on + strandat 2275.817 kb on + strandat 2275.818 kb on - strandat 2275.940 kb on - strandat 2275.940 kb on - strandat 2275.940 kb on - strandat 2275.988 kb on + strandat 2276.041 kb on + strandat 2276.051 kb on + strandat 2276.052 kb on - strandat 2276.102 kb on - strand, within IAI46_10775at 2276.102 kb on - strand, within IAI46_10775at 2276.408 kb on + strand, within IAI46_10775at 2276.408 kb on + strand, within IAI46_10775at 2276.409 kb on - strand, within IAI46_10775at 2276.410 kb on + strand, within IAI46_10775at 2276.581 kb on + strand, within IAI46_10775

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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2,274,227 - IAI46_10760 0.31 +0.1
2,274,227 - IAI46_10760 0.31 -0.2
2,274,298 + IAI46_10760 0.44 -0.6
2,274,481 + IAI46_10760 0.77 +0.6
2,274,511 + IAI46_10760 0.82 -1.0
2,274,601 + +1.9
2,274,602 - +2.0
2,274,614 + -2.0
2,274,689 + IAI46_10765 0.15 -0.1
2,274,689 + IAI46_10765 0.15 +0.5
2,274,690 - IAI46_10765 0.15 -0.8
2,274,774 + IAI46_10765 0.32 +0.2
2,274,775 - IAI46_10765 0.32 +0.6
2,274,775 - IAI46_10765 0.32 -0.3
2,274,777 - IAI46_10765 0.33 +0.9
2,274,777 - IAI46_10765 0.33 +1.7
2,274,777 - IAI46_10765 0.33 -0.4
2,274,786 - IAI46_10765 0.34 +0.4
2,274,867 - IAI46_10765 0.50 -0.6
2,274,936 + IAI46_10765 0.64 -1.1
2,274,955 - IAI46_10765 0.68 +1.6
2,275,153 + +0.5
2,275,153 + +0.2
2,275,153 + +0.4
2,275,153 + -1.2
2,275,153 + +0.0
2,275,154 - +0.6
2,275,154 - -1.9
2,275,198 + IAI46_10770 0.15 -0.2
2,275,206 + IAI46_10770 0.16 +0.9
2,275,297 + IAI46_10770 0.33 +0.6
2,275,350 + IAI46_10770 0.43 -0.2
2,275,350 + IAI46_10770 0.43 -0.3
2,275,351 - IAI46_10770 0.43 +0.1
2,275,381 + IAI46_10770 0.49 +1.1
2,275,382 - IAI46_10770 0.49 -1.7
2,275,452 - IAI46_10770 0.62 -0.9
2,275,452 - IAI46_10770 0.62 -0.9
2,275,472 - IAI46_10770 0.65 -0.2
2,275,534 - IAI46_10770 0.77 -1.2
2,275,534 - IAI46_10770 0.77 -0.1
2,275,662 - +1.9
2,275,716 + +0.4
2,275,734 + -2.0
2,275,742 - +0.3
2,275,817 + +0.1
2,275,817 + +0.2
2,275,818 - +1.5
2,275,940 - -0.6
2,275,940 - +1.2
2,275,940 - -1.2
2,275,988 + -1.4
2,276,041 + +0.8
2,276,051 + -1.2
2,276,052 - -0.2
2,276,102 - IAI46_10775 0.11 +0.1
2,276,102 - IAI46_10775 0.11 +0.5
2,276,408 + IAI46_10775 0.33 -1.4
2,276,408 + IAI46_10775 0.33 -0.6
2,276,409 - IAI46_10775 0.33 +0.0
2,276,410 + IAI46_10775 0.33 -0.6
2,276,581 + IAI46_10775 0.45 -0.7

Or see this region's nucleotide sequence