Strain Fitness in Serratia liquefaciens MT49 around IAI46_10300

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10290 and IAI46_10295 overlap by 4 nucleotidesIAI46_10295 and IAI46_10300 are separated by 73 nucleotidesIAI46_10300 and IAI46_10305 are separated by 84 nucleotides IAI46_10290: IAI46_10290 - SirB2 family protein, at 2,171,792 to 2,172,190 _10290 IAI46_10295: IAI46_10295 - tetratricopeptide repeat-containing protein, at 2,172,187 to 2,172,996 _10295 IAI46_10300: IAI46_10300 - 3-deoxy-8-phosphooctulonate synthase, at 2,173,070 to 2,173,924 _10300 IAI46_10305: IAI46_10305 - C4-dicarboxylic acid transporter DauA, at 2,174,009 to 2,175,697 _10305 Position (kb) 2173 2174Strain fitness (log2 ratio) -2 -1 0 1 2at 2172.134 kb on + strand, within IAI46_10290at 2172.182 kb on + strandat 2172.186 kb on + strandat 2172.186 kb on + strandat 2172.192 kb on + strandat 2172.195 kb on + strandat 2172.729 kb on + strand, within IAI46_10295at 2172.729 kb on + strand, within IAI46_10295at 2172.729 kb on + strand, within IAI46_10295at 2172.729 kb on + strand, within IAI46_10295at 2172.900 kb on + strand, within IAI46_10295at 2172.904 kb on + strand, within IAI46_10295at 2173.003 kb on + strandat 2173.003 kb on + strandat 2173.006 kb on + strandat 2173.006 kb on + strandat 2173.006 kb on + strandat 2173.941 kb on + strandat 2173.947 kb on + strandat 2173.960 kb on + strandat 2173.960 kb on + strandat 2174.049 kb on + strandat 2174.236 kb on - strand, within IAI46_10305at 2174.255 kb on + strand, within IAI46_10305at 2174.597 kb on + strand, within IAI46_10305at 2174.609 kb on + strand, within IAI46_10305at 2174.793 kb on - strand, within IAI46_10305at 2174.796 kb on - strand, within IAI46_10305at 2174.887 kb on + strand, within IAI46_10305

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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2,172,134 + IAI46_10290 0.86 +0.8
2,172,182 + -1.8
2,172,186 + +0.1
2,172,186 + +1.1
2,172,192 + -0.2
2,172,195 + -0.0
2,172,729 + IAI46_10295 0.67 -0.9
2,172,729 + IAI46_10295 0.67 +0.4
2,172,729 + IAI46_10295 0.67 -0.3
2,172,729 + IAI46_10295 0.67 -0.2
2,172,900 + IAI46_10295 0.88 -0.9
2,172,904 + IAI46_10295 0.89 -0.2
2,173,003 + +1.2
2,173,003 + -0.4
2,173,006 + +0.3
2,173,006 + -0.4
2,173,006 + +0.7
2,173,941 + +2.1
2,173,947 + +0.4
2,173,960 + +0.2
2,173,960 + -0.7
2,174,049 + +0.0
2,174,236 - IAI46_10305 0.13 -1.3
2,174,255 + IAI46_10305 0.15 -0.5
2,174,597 + IAI46_10305 0.35 +0.9
2,174,609 + IAI46_10305 0.36 -2.7
2,174,793 - IAI46_10305 0.46 -0.6
2,174,796 - IAI46_10305 0.47 -0.1
2,174,887 + IAI46_10305 0.52 -0.9

Or see this region's nucleotide sequence