Strain Fitness in Serratia liquefaciens MT49 around IAI46_10215

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10210 and IAI46_10215 are separated by 81 nucleotidesIAI46_10215 and IAI46_10220 overlap by 4 nucleotidesIAI46_10220 and IAI46_10225 are separated by 41 nucleotidesIAI46_10225 and IAI46_10230 overlap by 15 nucleotides IAI46_10210: IAI46_10210 - NupC/NupG family nucleoside CNT transporter, at 2,156,999 to 2,158,270 _10210 IAI46_10215: IAI46_10215 - helix-turn-helix transcriptional regulator, at 2,158,352 to 2,158,666 _10215 IAI46_10220: IAI46_10220 - polyketide cyclase, at 2,158,663 to 2,159,001 _10220 IAI46_10225: IAI46_10225 - ATP-dependent Clp protease proteolytic subunit, at 2,159,043 to 2,159,636 _10225 IAI46_10230: IAI46_10230 - TetR/AcrR family transcriptional regulator, at 2,159,622 to 2,160,185 _10230 Position (kb) 2158 2159Strain fitness (log2 ratio) -2 -1 0 1at 2157.490 kb on + strand, within IAI46_10210at 2157.493 kb on + strand, within IAI46_10210at 2157.599 kb on + strand, within IAI46_10210at 2157.653 kb on - strand, within IAI46_10210at 2157.795 kb on + strand, within IAI46_10210at 2157.826 kb on + strand, within IAI46_10210at 2157.897 kb on - strand, within IAI46_10210at 2157.918 kb on - strand, within IAI46_10210at 2157.918 kb on - strand, within IAI46_10210at 2157.919 kb on + strand, within IAI46_10210at 2157.932 kb on - strand, within IAI46_10210at 2158.001 kb on + strand, within IAI46_10210at 2158.338 kb on - strandat 2158.340 kb on + strandat 2158.347 kb on + strandat 2158.348 kb on - strandat 2158.551 kb on - strand, within IAI46_10215at 2158.601 kb on + strand, within IAI46_10215at 2158.602 kb on - strand, within IAI46_10215at 2158.602 kb on - strand, within IAI46_10215at 2158.922 kb on + strand, within IAI46_10220at 2159.111 kb on + strand, within IAI46_10225at 2159.239 kb on + strand, within IAI46_10225at 2159.243 kb on + strand, within IAI46_10225at 2159.286 kb on + strand, within IAI46_10225at 2159.287 kb on - strand, within IAI46_10225at 2159.294 kb on + strand, within IAI46_10225at 2159.294 kb on + strand, within IAI46_10225at 2159.294 kb on + strand, within IAI46_10225at 2159.301 kb on + strand, within IAI46_10225at 2159.301 kb on + strand, within IAI46_10225at 2159.321 kb on + strand, within IAI46_10225at 2159.321 kb on + strand, within IAI46_10225at 2159.322 kb on - strand, within IAI46_10225at 2159.322 kb on - strand, within IAI46_10225at 2159.322 kb on - strand, within IAI46_10225at 2159.460 kb on - strand, within IAI46_10225at 2159.460 kb on - strand, within IAI46_10225at 2159.466 kb on - strand, within IAI46_10225at 2159.615 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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2,157,490 + IAI46_10210 0.39 +0.1
2,157,493 + IAI46_10210 0.39 -0.1
2,157,599 + IAI46_10210 0.47 +1.6
2,157,653 - IAI46_10210 0.51 +0.5
2,157,795 + IAI46_10210 0.63 +0.2
2,157,826 + IAI46_10210 0.65 -1.4
2,157,897 - IAI46_10210 0.71 +0.7
2,157,918 - IAI46_10210 0.72 +0.3
2,157,918 - IAI46_10210 0.72 +0.5
2,157,919 + IAI46_10210 0.72 -0.8
2,157,932 - IAI46_10210 0.73 +0.3
2,158,001 + IAI46_10210 0.79 +0.4
2,158,338 - -0.4
2,158,340 + -1.1
2,158,347 + -0.0
2,158,348 - -0.2
2,158,551 - IAI46_10215 0.63 -2.1
2,158,601 + IAI46_10215 0.79 -1.5
2,158,602 - IAI46_10215 0.79 +0.5
2,158,602 - IAI46_10215 0.79 -0.7
2,158,922 + IAI46_10220 0.76 -1.4
2,159,111 + IAI46_10225 0.11 +0.4
2,159,239 + IAI46_10225 0.33 +0.0
2,159,243 + IAI46_10225 0.34 +0.3
2,159,286 + IAI46_10225 0.41 +1.5
2,159,287 - IAI46_10225 0.41 -0.1
2,159,294 + IAI46_10225 0.42 +0.9
2,159,294 + IAI46_10225 0.42 +0.3
2,159,294 + IAI46_10225 0.42 -0.0
2,159,301 + IAI46_10225 0.43 +0.0
2,159,301 + IAI46_10225 0.43 +0.5
2,159,321 + IAI46_10225 0.47 +0.2
2,159,321 + IAI46_10225 0.47 -1.3
2,159,322 - IAI46_10225 0.47 +0.3
2,159,322 - IAI46_10225 0.47 +1.3
2,159,322 - IAI46_10225 0.47 +0.9
2,159,460 - IAI46_10225 0.70 +0.1
2,159,460 - IAI46_10225 0.70 +0.5
2,159,466 - IAI46_10225 0.71 -0.5
2,159,615 + +1.5

Or see this region's nucleotide sequence