Strain Fitness in Serratia liquefaciens MT49 around IAI46_09405

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09385 and IAI46_09390 overlap by 14 nucleotidesIAI46_09390 and IAI46_09395 overlap by 8 nucleotidesIAI46_09395 and IAI46_09400 overlap by 4 nucleotidesIAI46_09400 and IAI46_09405 are separated by 4 nucleotidesIAI46_09405 and IAI46_09410 are separated by 379 nucleotidesIAI46_09410 and IAI46_09415 are separated by 1 nucleotides IAI46_09385: IAI46_09385 - hypothetical protein, at 2,001,083 to 2,001,511 _09385 IAI46_09390: IAI46_09390 - hypothetical protein, at 2,001,498 to 2,001,893 _09390 IAI46_09395: IAI46_09395 - hypothetical protein, at 2,001,886 to 2,002,068 _09395 IAI46_09400: IAI46_09400 - hypothetical protein, at 2,002,065 to 2,002,364 _09400 IAI46_09405: IAI46_09405 - hypothetical protein, at 2,002,369 to 2,002,857 _09405 IAI46_09410: IAI46_09410 - hypothetical protein, at 2,003,237 to 2,003,647 _09410 IAI46_09415: IAI46_09415 - hypothetical protein, at 2,003,649 to 2,003,903 _09415 Position (kb) 2002 2003Strain fitness (log2 ratio) -1 0 1 2at 2001.377 kb on + strand, within IAI46_09385at 2001.404 kb on + strand, within IAI46_09385at 2001.429 kb on + strand, within IAI46_09385at 2001.657 kb on - strand, within IAI46_09390at 2001.660 kb on + strand, within IAI46_09390at 2001.748 kb on - strand, within IAI46_09390at 2001.842 kb on + strand, within IAI46_09390at 2001.903 kb on - strandat 2001.976 kb on + strand, within IAI46_09395at 2001.976 kb on + strand, within IAI46_09395at 2002.019 kb on + strand, within IAI46_09395at 2002.019 kb on + strand, within IAI46_09395at 2002.019 kb on + strand, within IAI46_09395at 2002.020 kb on - strand, within IAI46_09395at 2002.020 kb on - strand, within IAI46_09395at 2002.064 kb on + strandat 2002.064 kb on + strandat 2002.064 kb on + strandat 2002.065 kb on - strandat 2002.073 kb on - strandat 2002.085 kb on + strandat 2002.086 kb on - strandat 2002.205 kb on + strand, within IAI46_09400at 2002.211 kb on + strand, within IAI46_09400at 2002.212 kb on - strand, within IAI46_09400at 2002.317 kb on + strand, within IAI46_09400at 2002.317 kb on + strand, within IAI46_09400at 2002.318 kb on - strand, within IAI46_09400at 2002.377 kb on + strandat 2002.437 kb on + strand, within IAI46_09405at 2002.547 kb on - strand, within IAI46_09405at 2002.551 kb on - strand, within IAI46_09405

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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2,001,377 + IAI46_09385 0.69 -0.8
2,001,404 + IAI46_09385 0.75 -0.1
2,001,429 + IAI46_09385 0.81 +0.4
2,001,657 - IAI46_09390 0.40 -0.5
2,001,660 + IAI46_09390 0.41 +0.2
2,001,748 - IAI46_09390 0.63 -0.5
2,001,842 + IAI46_09390 0.87 -1.1
2,001,903 - -0.2
2,001,976 + IAI46_09395 0.49 +0.2
2,001,976 + IAI46_09395 0.49 +0.7
2,002,019 + IAI46_09395 0.73 -1.2
2,002,019 + IAI46_09395 0.73 +0.1
2,002,019 + IAI46_09395 0.73 -0.5
2,002,020 - IAI46_09395 0.73 -1.3
2,002,020 - IAI46_09395 0.73 +0.6
2,002,064 + +1.4
2,002,064 + -0.8
2,002,064 + +0.7
2,002,065 - -0.9
2,002,073 - -0.3
2,002,085 + -0.4
2,002,086 - -0.6
2,002,205 + IAI46_09400 0.47 +1.1
2,002,211 + IAI46_09400 0.49 +0.7
2,002,212 - IAI46_09400 0.49 +1.5
2,002,317 + IAI46_09400 0.84 -0.3
2,002,317 + IAI46_09400 0.84 +1.8
2,002,318 - IAI46_09400 0.84 -0.8
2,002,377 + +1.1
2,002,437 + IAI46_09405 0.14 -0.1
2,002,547 - IAI46_09405 0.36 +0.9
2,002,551 - IAI46_09405 0.37 -0.2

Or see this region's nucleotide sequence