Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_08995 and IAI46_09000 are separated by 77 nucleotides IAI46_09000 and IAI46_09005 are separated by 68 nucleotides IAI46_09005 and IAI46_09010 overlap by 17 nucleotides IAI46_09010 and IAI46_09015 are separated by 119 nucleotides
IAI46_08995: IAI46_08995 - NAD(P)H:quinone oxidoreductase, at 1,930,145 to 1,930,744
_08995
IAI46_09000: IAI46_09000 - LysE family transporter, at 1,930,822 to 1,931,439
_09000
IAI46_09005: IAI46_09005 - LysR family transcriptional regulator, at 1,931,508 to 1,932,431
_09005
IAI46_09010: IAI46_09010 - helix-turn-helix domain-containing protein, at 1,932,415 to 1,932,885
_09010
IAI46_09015: IAI46_09015 - helix-turn-helix transcriptional regulator, at 1,933,005 to 1,933,580
_09015
Position (kb) 1931
1932
1933 Strain fitness (log2 ratio) -1
0
1 at 1930.537 kb on - strand, within IAI46_08995 at 1930.537 kb on - strand, within IAI46_08995 at 1930.710 kb on + strand at 1930.711 kb on - strand at 1930.711 kb on - strand at 1930.720 kb on - strand at 1930.720 kb on - strand at 1930.722 kb on + strand at 1930.722 kb on + strand at 1930.723 kb on - strand at 1930.785 kb on - strand at 1930.785 kb on - strand at 1930.790 kb on + strand at 1930.790 kb on + strand at 1930.824 kb on - strand at 1930.824 kb on - strand at 1930.880 kb on - strand at 1930.889 kb on - strand, within IAI46_09000 at 1931.041 kb on - strand, within IAI46_09000 at 1931.279 kb on + strand, within IAI46_09000 at 1931.279 kb on + strand, within IAI46_09000 at 1931.280 kb on - strand, within IAI46_09000 at 1931.404 kb on + strand at 1931.481 kb on - strand at 1931.691 kb on - strand, within IAI46_09005 at 1931.691 kb on - strand, within IAI46_09005 at 1931.724 kb on + strand, within IAI46_09005 at 1931.725 kb on - strand, within IAI46_09005 at 1931.833 kb on + strand, within IAI46_09005 at 1931.854 kb on + strand, within IAI46_09005 at 1931.854 kb on + strand, within IAI46_09005 at 1932.346 kb on - strand at 1932.517 kb on - strand, within IAI46_09010 at 1932.551 kb on + strand, within IAI46_09010 at 1932.552 kb on - strand, within IAI46_09010 at 1932.573 kb on + strand, within IAI46_09010 at 1932.574 kb on - strand, within IAI46_09010 at 1932.598 kb on - strand, within IAI46_09010 at 1932.614 kb on - strand, within IAI46_09010 at 1932.720 kb on + strand, within IAI46_09010 at 1932.721 kb on - strand, within IAI46_09010 at 1932.721 kb on - strand, within IAI46_09010 at 1932.721 kb on - strand, within IAI46_09010 at 1932.724 kb on + strand, within IAI46_09010 at 1932.724 kb on + strand, within IAI46_09010 at 1932.725 kb on - strand, within IAI46_09010 at 1932.859 kb on + strand at 1932.859 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic remove 1,930,537 - IAI46_08995 0.65 +1.0 1,930,537 - IAI46_08995 0.65 -0.4 1,930,710 + -0.2 1,930,711 - -1.4 1,930,711 - -0.4 1,930,720 - +0.2 1,930,720 - -1.1 1,930,722 + -0.9 1,930,722 + -0.6 1,930,723 - -0.4 1,930,785 - +1.4 1,930,785 - -0.2 1,930,790 + +1.0 1,930,790 + -0.3 1,930,824 - +0.4 1,930,824 - +0.6 1,930,880 - -0.5 1,930,889 - IAI46_09000 0.11 +0.6 1,931,041 - IAI46_09000 0.35 +1.6 1,931,279 + IAI46_09000 0.74 +0.2 1,931,279 + IAI46_09000 0.74 -0.8 1,931,280 - IAI46_09000 0.74 -0.4 1,931,404 + -0.9 1,931,481 - -0.1 1,931,691 - IAI46_09005 0.20 +0.9 1,931,691 - IAI46_09005 0.20 -0.8 1,931,724 + IAI46_09005 0.23 +0.6 1,931,725 - IAI46_09005 0.23 +0.5 1,931,833 + IAI46_09005 0.35 +0.7 1,931,854 + IAI46_09005 0.37 -1.2 1,931,854 + IAI46_09005 0.37 +0.9 1,932,346 - -0.2 1,932,517 - IAI46_09010 0.22 -1.0 1,932,551 + IAI46_09010 0.29 -0.5 1,932,552 - IAI46_09010 0.29 +1.6 1,932,573 + IAI46_09010 0.34 -0.2 1,932,574 - IAI46_09010 0.34 -0.4 1,932,598 - IAI46_09010 0.39 -0.0 1,932,614 - IAI46_09010 0.42 +0.1 1,932,720 + IAI46_09010 0.65 +1.2 1,932,721 - IAI46_09010 0.65 -1.0 1,932,721 - IAI46_09010 0.65 -0.8 1,932,721 - IAI46_09010 0.65 +1.0 1,932,724 + IAI46_09010 0.66 -0.3 1,932,724 + IAI46_09010 0.66 -0.2 1,932,725 - IAI46_09010 0.66 -0.2 1,932,859 + +0.8 1,932,859 + +1.4
Or see this region's nucleotide sequence