Strain Fitness in Serratia liquefaciens MT49 around IAI46_08580

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08575 and IAI46_08580 are separated by 270 nucleotidesIAI46_08580 and IAI46_08585 are separated by 137 nucleotidesIAI46_08585 and IAI46_08590 are separated by 1 nucleotides IAI46_08575: IAI46_08575 - serine--tRNA ligase, at 1,829,203 to 1,830,495 _08575 IAI46_08580: IAI46_08580 - dimethyl sulfoxide reductase subunit A, at 1,830,766 to 1,833,219 _08580 IAI46_08585: IAI46_08585 - dimethylsulfoxide reductase subunit B, at 1,833,357 to 1,833,974 _08585 IAI46_08590: IAI46_08590 - dimethyl sulfoxide reductase anchor subunit family protein, at 1,833,976 to 1,834,836 _08590 Position (kb) 1830 1831 1832 1833 1834Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1830.498 kb on + strandat 1830.601 kb on - strandat 1830.606 kb on + strandat 1830.637 kb on + strandat 1830.651 kb on - strandat 1830.734 kb on + strandat 1830.740 kb on + strandat 1830.749 kb on - strandat 1830.749 kb on - strandat 1830.765 kb on + strandat 1830.766 kb on - strandat 1830.766 kb on - strandat 1830.824 kb on + strandat 1830.824 kb on + strandat 1830.853 kb on - strandat 1830.869 kb on + strandat 1830.869 kb on + strandat 1830.870 kb on - strandat 1830.870 kb on - strandat 1830.870 kb on - strandat 1830.876 kb on - strandat 1831.096 kb on - strand, within IAI46_08580at 1831.133 kb on - strand, within IAI46_08580at 1831.203 kb on + strand, within IAI46_08580at 1831.221 kb on - strand, within IAI46_08580at 1831.240 kb on + strand, within IAI46_08580at 1831.240 kb on + strand, within IAI46_08580at 1831.256 kb on + strand, within IAI46_08580at 1831.256 kb on + strand, within IAI46_08580at 1831.257 kb on - strand, within IAI46_08580at 1831.257 kb on - strand, within IAI46_08580at 1831.257 kb on - strand, within IAI46_08580at 1831.257 kb on - strand, within IAI46_08580at 1831.257 kb on - strand, within IAI46_08580at 1831.258 kb on + strand, within IAI46_08580at 1831.259 kb on - strand, within IAI46_08580at 1831.260 kb on + strand, within IAI46_08580at 1831.260 kb on + strand, within IAI46_08580at 1831.267 kb on + strand, within IAI46_08580at 1831.267 kb on + strand, within IAI46_08580at 1831.267 kb on + strand, within IAI46_08580at 1831.345 kb on + strand, within IAI46_08580at 1831.375 kb on + strand, within IAI46_08580at 1831.375 kb on + strand, within IAI46_08580at 1831.409 kb on - strand, within IAI46_08580at 1831.410 kb on + strand, within IAI46_08580at 1831.410 kb on + strand, within IAI46_08580at 1831.410 kb on + strand, within IAI46_08580at 1831.410 kb on + strand, within IAI46_08580at 1831.411 kb on - strand, within IAI46_08580at 1831.411 kb on - strand, within IAI46_08580at 1831.411 kb on - strand, within IAI46_08580at 1831.411 kb on - strand, within IAI46_08580at 1831.411 kb on - strand, within IAI46_08580at 1831.411 kb on - strand, within IAI46_08580at 1831.411 kb on - strand, within IAI46_08580at 1831.414 kb on + strand, within IAI46_08580at 1831.414 kb on + strand, within IAI46_08580at 1831.415 kb on - strand, within IAI46_08580at 1831.415 kb on - strand, within IAI46_08580at 1831.518 kb on + strand, within IAI46_08580at 1831.519 kb on - strand, within IAI46_08580at 1831.522 kb on + strand, within IAI46_08580at 1831.522 kb on + strand, within IAI46_08580at 1831.525 kb on + strand, within IAI46_08580at 1831.525 kb on + strand, within IAI46_08580at 1831.526 kb on - strand, within IAI46_08580at 1831.670 kb on + strand, within IAI46_08580at 1831.670 kb on + strand, within IAI46_08580at 1831.671 kb on - strand, within IAI46_08580at 1831.671 kb on - strand, within IAI46_08580at 1831.771 kb on + strand, within IAI46_08580at 1831.772 kb on - strand, within IAI46_08580at 1831.772 kb on - strand, within IAI46_08580at 1831.772 kb on - strand, within IAI46_08580at 1831.772 kb on - strand, within IAI46_08580at 1831.774 kb on - strand, within IAI46_08580at 1831.781 kb on - strand, within IAI46_08580at 1831.860 kb on + strand, within IAI46_08580at 1831.860 kb on + strand, within IAI46_08580at 1831.863 kb on + strand, within IAI46_08580at 1831.864 kb on - strand, within IAI46_08580at 1831.904 kb on - strand, within IAI46_08580at 1831.904 kb on - strand, within IAI46_08580at 1832.035 kb on + strand, within IAI46_08580at 1832.035 kb on + strand, within IAI46_08580at 1832.035 kb on + strand, within IAI46_08580at 1832.036 kb on - strand, within IAI46_08580at 1832.036 kb on - strand, within IAI46_08580at 1832.036 kb on - strand, within IAI46_08580at 1832.043 kb on + strand, within IAI46_08580at 1832.043 kb on + strand, within IAI46_08580at 1832.044 kb on - strand, within IAI46_08580at 1832.100 kb on + strand, within IAI46_08580at 1832.245 kb on - strand, within IAI46_08580at 1832.326 kb on + strand, within IAI46_08580at 1832.326 kb on + strand, within IAI46_08580at 1832.339 kb on + strand, within IAI46_08580at 1832.377 kb on - strand, within IAI46_08580at 1832.390 kb on - strand, within IAI46_08580at 1832.461 kb on + strand, within IAI46_08580at 1832.461 kb on + strand, within IAI46_08580at 1832.462 kb on - strand, within IAI46_08580at 1832.597 kb on - strand, within IAI46_08580at 1832.597 kb on - strand, within IAI46_08580at 1832.613 kb on + strand, within IAI46_08580at 1832.624 kb on - strand, within IAI46_08580at 1832.624 kb on - strand, within IAI46_08580at 1832.726 kb on - strand, within IAI46_08580at 1832.728 kb on + strand, within IAI46_08580at 1832.797 kb on - strand, within IAI46_08580at 1832.800 kb on + strand, within IAI46_08580at 1832.845 kb on + strand, within IAI46_08580at 1832.893 kb on - strand, within IAI46_08580at 1832.916 kb on - strand, within IAI46_08580at 1833.003 kb on + strandat 1833.177 kb on + strandat 1833.189 kb on + strandat 1833.190 kb on - strandat 1833.215 kb on + strandat 1833.227 kb on + strandat 1833.227 kb on + strandat 1833.227 kb on + strandat 1833.275 kb on + strandat 1833.276 kb on - strandat 1833.279 kb on - strandat 1833.279 kb on - strandat 1833.279 kb on - strandat 1833.279 kb on - strandat 1833.285 kb on - strandat 1833.305 kb on + strandat 1833.306 kb on - strandat 1833.333 kb on - strandat 1833.344 kb on - strandat 1833.438 kb on - strand, within IAI46_08585at 1833.474 kb on + strand, within IAI46_08585at 1833.475 kb on - strand, within IAI46_08585at 1833.475 kb on - strand, within IAI46_08585at 1833.475 kb on - strand, within IAI46_08585at 1833.480 kb on + strand, within IAI46_08585at 1833.481 kb on - strand, within IAI46_08585at 1833.540 kb on + strand, within IAI46_08585at 1833.688 kb on - strand, within IAI46_08585at 1833.744 kb on + strand, within IAI46_08585at 1833.745 kb on - strand, within IAI46_08585at 1833.745 kb on - strand, within IAI46_08585at 1833.768 kb on - strand, within IAI46_08585at 1834.014 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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1,830,498 + +1.4
1,830,601 - -2.4
1,830,606 + +1.0
1,830,637 + -0.1
1,830,651 - +0.3
1,830,734 + -1.7
1,830,740 + -0.0
1,830,749 - -0.9
1,830,749 - +1.2
1,830,765 + -0.6
1,830,766 - -1.0
1,830,766 - -0.0
1,830,824 + +1.6
1,830,824 + +0.4
1,830,853 - +0.3
1,830,869 + +0.3
1,830,869 + +0.4
1,830,870 - +0.1
1,830,870 - -1.7
1,830,870 - +0.3
1,830,876 - +1.6
1,831,096 - IAI46_08580 0.13 +0.6
1,831,133 - IAI46_08580 0.15 -1.0
1,831,203 + IAI46_08580 0.18 +0.1
1,831,221 - IAI46_08580 0.19 +0.1
1,831,240 + IAI46_08580 0.19 +1.6
1,831,240 + IAI46_08580 0.19 +1.3
1,831,256 + IAI46_08580 0.20 -1.5
1,831,256 + IAI46_08580 0.20 -0.0
1,831,257 - IAI46_08580 0.20 -0.0
1,831,257 - IAI46_08580 0.20 +0.2
1,831,257 - IAI46_08580 0.20 -0.4
1,831,257 - IAI46_08580 0.20 -0.8
1,831,257 - IAI46_08580 0.20 +0.5
1,831,258 + IAI46_08580 0.20 +0.6
1,831,259 - IAI46_08580 0.20 +1.8
1,831,260 + IAI46_08580 0.20 +0.2
1,831,260 + IAI46_08580 0.20 -0.4
1,831,267 + IAI46_08580 0.20 +0.1
1,831,267 + IAI46_08580 0.20 -1.1
1,831,267 + IAI46_08580 0.20 +0.7
1,831,345 + IAI46_08580 0.24 -0.7
1,831,375 + IAI46_08580 0.25 +0.1
1,831,375 + IAI46_08580 0.25 +0.6
1,831,409 - IAI46_08580 0.26 -0.3
1,831,410 + IAI46_08580 0.26 +0.8
1,831,410 + IAI46_08580 0.26 -0.4
1,831,410 + IAI46_08580 0.26 +0.3
1,831,410 + IAI46_08580 0.26 -0.9
1,831,411 - IAI46_08580 0.26 -0.0
1,831,411 - IAI46_08580 0.26 +0.5
1,831,411 - IAI46_08580 0.26 +1.9
1,831,411 - IAI46_08580 0.26 -0.5
1,831,411 - IAI46_08580 0.26 +0.2
1,831,411 - IAI46_08580 0.26 +1.9
1,831,411 - IAI46_08580 0.26 -0.8
1,831,414 + IAI46_08580 0.26 -0.4
1,831,414 + IAI46_08580 0.26 +0.6
1,831,415 - IAI46_08580 0.26 -1.2
1,831,415 - IAI46_08580 0.26 +0.4
1,831,518 + IAI46_08580 0.31 -0.7
1,831,519 - IAI46_08580 0.31 -0.5
1,831,522 + IAI46_08580 0.31 +0.4
1,831,522 + IAI46_08580 0.31 +0.2
1,831,525 + IAI46_08580 0.31 -0.8
1,831,525 + IAI46_08580 0.31 -1.0
1,831,526 - IAI46_08580 0.31 +0.1
1,831,670 + IAI46_08580 0.37 +2.0
1,831,670 + IAI46_08580 0.37 +0.3
1,831,671 - IAI46_08580 0.37 -0.5
1,831,671 - IAI46_08580 0.37 +1.2
1,831,771 + IAI46_08580 0.41 -0.4
1,831,772 - IAI46_08580 0.41 +0.7
1,831,772 - IAI46_08580 0.41 +0.1
1,831,772 - IAI46_08580 0.41 -0.3
1,831,772 - IAI46_08580 0.41 -0.1
1,831,774 - IAI46_08580 0.41 +0.1
1,831,781 - IAI46_08580 0.41 -1.8
1,831,860 + IAI46_08580 0.45 -0.6
1,831,860 + IAI46_08580 0.45 +0.9
1,831,863 + IAI46_08580 0.45 -2.1
1,831,864 - IAI46_08580 0.45 -1.0
1,831,904 - IAI46_08580 0.46 +1.6
1,831,904 - IAI46_08580 0.46 +0.0
1,832,035 + IAI46_08580 0.52 -0.3
1,832,035 + IAI46_08580 0.52 +0.0
1,832,035 + IAI46_08580 0.52 -1.6
1,832,036 - IAI46_08580 0.52 +0.9
1,832,036 - IAI46_08580 0.52 +0.8
1,832,036 - IAI46_08580 0.52 -0.1
1,832,043 + IAI46_08580 0.52 +0.9
1,832,043 + IAI46_08580 0.52 -0.4
1,832,044 - IAI46_08580 0.52 -0.4
1,832,100 + IAI46_08580 0.54 -0.5
1,832,245 - IAI46_08580 0.60 +2.1
1,832,326 + IAI46_08580 0.64 -0.3
1,832,326 + IAI46_08580 0.64 +0.6
1,832,339 + IAI46_08580 0.64 -0.5
1,832,377 - IAI46_08580 0.66 +1.2
1,832,390 - IAI46_08580 0.66 +0.4
1,832,461 + IAI46_08580 0.69 +1.2
1,832,461 + IAI46_08580 0.69 +0.7
1,832,462 - IAI46_08580 0.69 -0.9
1,832,597 - IAI46_08580 0.75 -1.2
1,832,597 - IAI46_08580 0.75 +1.0
1,832,613 + IAI46_08580 0.75 -0.2
1,832,624 - IAI46_08580 0.76 +0.8
1,832,624 - IAI46_08580 0.76 +1.6
1,832,726 - IAI46_08580 0.80 -0.6
1,832,728 + IAI46_08580 0.80 +0.1
1,832,797 - IAI46_08580 0.83 -0.0
1,832,800 + IAI46_08580 0.83 -2.0
1,832,845 + IAI46_08580 0.85 -0.6
1,832,893 - IAI46_08580 0.87 -0.6
1,832,916 - IAI46_08580 0.88 -0.8
1,833,003 + -2.1
1,833,177 + +0.7
1,833,189 + -3.7
1,833,190 - +0.4
1,833,215 + +0.2
1,833,227 + +0.1
1,833,227 + +0.6
1,833,227 + -0.8
1,833,275 + +0.3
1,833,276 - +0.0
1,833,279 - -0.5
1,833,279 - -0.3
1,833,279 - -1.8
1,833,279 - +1.2
1,833,285 - -0.6
1,833,305 + +0.2
1,833,306 - +2.1
1,833,333 - +0.4
1,833,344 - +0.5
1,833,438 - IAI46_08585 0.13 -1.4
1,833,474 + IAI46_08585 0.19 -0.9
1,833,475 - IAI46_08585 0.19 -2.0
1,833,475 - IAI46_08585 0.19 -0.6
1,833,475 - IAI46_08585 0.19 -1.0
1,833,480 + IAI46_08585 0.20 -1.0
1,833,481 - IAI46_08585 0.20 +0.6
1,833,540 + IAI46_08585 0.30 -0.5
1,833,688 - IAI46_08585 0.54 -0.4
1,833,744 + IAI46_08585 0.63 -0.0
1,833,745 - IAI46_08585 0.63 -0.1
1,833,745 - IAI46_08585 0.63 -0.0
1,833,768 - IAI46_08585 0.67 -0.1
1,834,014 + +0.6

Or see this region's nucleotide sequence