Strain Fitness in Serratia liquefaciens MT49 around IAI46_07255

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_07245 and IAI46_07250 are separated by 9 nucleotidesIAI46_07250 and IAI46_07255 overlap by 16 nucleotidesIAI46_07255 and IAI46_07260 are separated by 140 nucleotidesIAI46_07260 and IAI46_07265 are separated by 169 nucleotides IAI46_07245: IAI46_07245 - urea ABC transporter ATP-binding subunit UrtE, at 1,537,181 to 1,537,879 _07245 IAI46_07250: IAI46_07250 - type II toxin-antitoxin system RelE/ParE family toxin, at 1,537,889 to 1,538,188 _07250 IAI46_07255: IAI46_07255 - type II toxin-antitoxin system ParD family antitoxin, at 1,538,173 to 1,538,436 _07255 IAI46_07260: IAI46_07260 - DUF2165 domain-containing protein, at 1,538,577 to 1,539,089 _07260 IAI46_07265: IAI46_07265 - acid phosphatase, at 1,539,259 to 1,540,971 _07265 Position (kb) 1538 1539Strain fitness (log2 ratio) -2 -1 0 1at 1537.180 kb on + strandat 1537.209 kb on - strandat 1537.211 kb on + strandat 1537.230 kb on + strandat 1537.339 kb on + strand, within IAI46_07245at 1537.402 kb on - strand, within IAI46_07245at 1537.418 kb on + strand, within IAI46_07245at 1537.418 kb on + strand, within IAI46_07245at 1537.419 kb on - strand, within IAI46_07245at 1537.419 kb on - strand, within IAI46_07245at 1537.510 kb on + strand, within IAI46_07245at 1537.510 kb on + strand, within IAI46_07245at 1537.511 kb on - strand, within IAI46_07245at 1537.511 kb on - strand, within IAI46_07245at 1537.511 kb on - strand, within IAI46_07245at 1537.525 kb on + strand, within IAI46_07245at 1537.525 kb on + strand, within IAI46_07245at 1537.526 kb on - strand, within IAI46_07245at 1537.529 kb on + strand, within IAI46_07245at 1537.529 kb on + strand, within IAI46_07245at 1537.530 kb on - strand, within IAI46_07245at 1537.537 kb on - strand, within IAI46_07245at 1537.749 kb on + strand, within IAI46_07245at 1537.749 kb on + strand, within IAI46_07245at 1537.763 kb on + strand, within IAI46_07245at 1537.790 kb on + strand, within IAI46_07245at 1537.790 kb on + strand, within IAI46_07245at 1537.791 kb on - strand, within IAI46_07245at 1537.857 kb on + strandat 1537.875 kb on + strandat 1537.875 kb on + strandat 1537.875 kb on + strandat 1537.878 kb on - strandat 1537.891 kb on - strandat 1537.898 kb on - strandat 1537.950 kb on - strand, within IAI46_07250at 1537.961 kb on - strand, within IAI46_07250at 1538.028 kb on - strand, within IAI46_07250at 1538.053 kb on + strand, within IAI46_07250at 1538.054 kb on - strand, within IAI46_07250at 1538.072 kb on - strand, within IAI46_07250at 1538.078 kb on - strand, within IAI46_07250at 1538.078 kb on - strand, within IAI46_07250at 1538.089 kb on - strand, within IAI46_07250at 1538.089 kb on - strand, within IAI46_07250at 1538.089 kb on - strand, within IAI46_07250at 1538.106 kb on - strand, within IAI46_07250at 1538.133 kb on + strand, within IAI46_07250at 1538.134 kb on - strand, within IAI46_07250at 1538.361 kb on - strand, within IAI46_07255at 1538.416 kb on + strandat 1538.454 kb on + strandat 1538.454 kb on + strandat 1538.454 kb on + strandat 1538.455 kb on - strandat 1538.455 kb on - strandat 1538.455 kb on - strandat 1538.480 kb on + strandat 1538.480 kb on + strandat 1538.481 kb on - strandat 1538.486 kb on - strandat 1538.488 kb on - strandat 1538.494 kb on + strandat 1538.494 kb on + strandat 1538.494 kb on + strandat 1538.494 kb on + strandat 1538.495 kb on - strandat 1538.499 kb on + strandat 1538.499 kb on + strandat 1538.500 kb on - strandat 1538.562 kb on + strandat 1538.663 kb on + strand, within IAI46_07260at 1538.714 kb on + strand, within IAI46_07260at 1538.714 kb on + strand, within IAI46_07260at 1538.795 kb on + strand, within IAI46_07260at 1538.799 kb on - strand, within IAI46_07260at 1538.842 kb on + strand, within IAI46_07260at 1538.862 kb on - strand, within IAI46_07260at 1538.875 kb on - strand, within IAI46_07260at 1538.875 kb on - strand, within IAI46_07260at 1538.921 kb on - strand, within IAI46_07260at 1538.952 kb on - strand, within IAI46_07260at 1538.952 kb on - strand, within IAI46_07260at 1539.025 kb on + strand, within IAI46_07260at 1539.030 kb on + strand, within IAI46_07260at 1539.030 kb on + strand, within IAI46_07260at 1539.030 kb on + strand, within IAI46_07260at 1539.031 kb on - strand, within IAI46_07260at 1539.031 kb on - strand, within IAI46_07260at 1539.031 kb on - strand, within IAI46_07260at 1539.031 kb on - strand, within IAI46_07260at 1539.032 kb on + strand, within IAI46_07260at 1539.033 kb on - strand, within IAI46_07260at 1539.033 kb on - strand, within IAI46_07260at 1539.044 kb on + strandat 1539.110 kb on + strandat 1539.183 kb on + strandat 1539.184 kb on - strandat 1539.184 kb on - strandat 1539.194 kb on + strandat 1539.267 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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1,537,180 + -0.4
1,537,209 - -1.4
1,537,211 + +0.5
1,537,230 + +0.4
1,537,339 + IAI46_07245 0.23 -0.1
1,537,402 - IAI46_07245 0.32 +1.3
1,537,418 + IAI46_07245 0.34 -0.7
1,537,418 + IAI46_07245 0.34 +0.1
1,537,419 - IAI46_07245 0.34 -0.0
1,537,419 - IAI46_07245 0.34 -0.2
1,537,510 + IAI46_07245 0.47 -0.3
1,537,510 + IAI46_07245 0.47 -0.1
1,537,511 - IAI46_07245 0.47 +1.0
1,537,511 - IAI46_07245 0.47 +0.8
1,537,511 - IAI46_07245 0.47 +0.3
1,537,525 + IAI46_07245 0.49 +0.7
1,537,525 + IAI46_07245 0.49 -0.2
1,537,526 - IAI46_07245 0.49 +0.3
1,537,529 + IAI46_07245 0.50 -0.4
1,537,529 + IAI46_07245 0.50 -0.3
1,537,530 - IAI46_07245 0.50 -0.5
1,537,537 - IAI46_07245 0.51 -0.3
1,537,749 + IAI46_07245 0.81 -0.9
1,537,749 + IAI46_07245 0.81 -0.5
1,537,763 + IAI46_07245 0.83 +0.4
1,537,790 + IAI46_07245 0.87 -2.0
1,537,790 + IAI46_07245 0.87 +0.7
1,537,791 - IAI46_07245 0.87 -1.2
1,537,857 + -0.1
1,537,875 + +0.0
1,537,875 + -0.8
1,537,875 + -0.1
1,537,878 - -0.1
1,537,891 - -0.0
1,537,898 - -1.7
1,537,950 - IAI46_07250 0.20 -0.9
1,537,961 - IAI46_07250 0.24 -0.6
1,538,028 - IAI46_07250 0.46 -0.1
1,538,053 + IAI46_07250 0.55 +0.8
1,538,054 - IAI46_07250 0.55 +0.0
1,538,072 - IAI46_07250 0.61 +0.2
1,538,078 - IAI46_07250 0.63 -0.2
1,538,078 - IAI46_07250 0.63 -0.2
1,538,089 - IAI46_07250 0.67 +0.1
1,538,089 - IAI46_07250 0.67 +0.1
1,538,089 - IAI46_07250 0.67 +1.6
1,538,106 - IAI46_07250 0.72 +0.7
1,538,133 + IAI46_07250 0.81 -0.4
1,538,134 - IAI46_07250 0.82 -0.6
1,538,361 - IAI46_07255 0.71 +0.1
1,538,416 + -0.5
1,538,454 + +0.5
1,538,454 + -0.6
1,538,454 + -0.5
1,538,455 - +0.1
1,538,455 - +0.8
1,538,455 - -1.4
1,538,480 + -0.2
1,538,480 + -0.2
1,538,481 - +0.8
1,538,486 - +1.2
1,538,488 - -0.1
1,538,494 + -0.5
1,538,494 + +1.3
1,538,494 + -1.5
1,538,494 + +0.8
1,538,495 - +0.3
1,538,499 + +0.5
1,538,499 + +0.7
1,538,500 - +0.6
1,538,562 + -0.5
1,538,663 + IAI46_07260 0.17 +0.7
1,538,714 + IAI46_07260 0.27 +0.4
1,538,714 + IAI46_07260 0.27 -1.0
1,538,795 + IAI46_07260 0.42 -0.3
1,538,799 - IAI46_07260 0.43 -0.8
1,538,842 + IAI46_07260 0.52 +1.4
1,538,862 - IAI46_07260 0.56 -0.0
1,538,875 - IAI46_07260 0.58 +1.7
1,538,875 - IAI46_07260 0.58 +0.7
1,538,921 - IAI46_07260 0.67 -0.3
1,538,952 - IAI46_07260 0.73 -0.0
1,538,952 - IAI46_07260 0.73 -2.0
1,539,025 + IAI46_07260 0.87 -0.5
1,539,030 + IAI46_07260 0.88 -2.1
1,539,030 + IAI46_07260 0.88 +1.3
1,539,030 + IAI46_07260 0.88 -2.1
1,539,031 - IAI46_07260 0.88 -0.5
1,539,031 - IAI46_07260 0.88 -1.0
1,539,031 - IAI46_07260 0.88 -0.1
1,539,031 - IAI46_07260 0.88 -0.2
1,539,032 + IAI46_07260 0.89 -1.0
1,539,033 - IAI46_07260 0.89 +0.6
1,539,033 - IAI46_07260 0.89 -0.2
1,539,044 + -0.9
1,539,110 + +0.4
1,539,183 + +0.1
1,539,184 - -0.6
1,539,184 - -2.0
1,539,194 + -1.1
1,539,267 + -1.8

Or see this region's nucleotide sequence