Strain Fitness in Serratia liquefaciens MT49 around IAI46_06885

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06880 and IAI46_06885 are separated by 103 nucleotidesIAI46_06885 and IAI46_06890 overlap by 4 nucleotidesIAI46_06890 and IAI46_06895 are separated by 204 nucleotides IAI46_06880: IAI46_06880 - DUF1460 domain-containing protein, at 1,459,014 to 1,459,850 _06880 IAI46_06885: IAI46_06885 - GNAT family N-acetyltransferase, at 1,459,954 to 1,460,496 _06885 IAI46_06890: IAI46_06890 - N-acetyltransferase, at 1,460,493 to 1,460,963 _06890 IAI46_06895: IAI46_06895 - YIP1 family protein, at 1,461,168 to 1,461,758 _06895 Position (kb) 1459 1460 1461Strain fitness (log2 ratio) -2 -1 0 1at 1459.057 kb on + strandat 1459.065 kb on - strandat 1459.089 kb on - strandat 1459.089 kb on - strandat 1459.098 kb on - strand, within IAI46_06880at 1459.119 kb on + strand, within IAI46_06880at 1459.142 kb on + strand, within IAI46_06880at 1459.142 kb on + strand, within IAI46_06880at 1459.143 kb on - strand, within IAI46_06880at 1459.144 kb on + strand, within IAI46_06880at 1459.144 kb on + strand, within IAI46_06880at 1459.144 kb on + strand, within IAI46_06880at 1459.144 kb on + strand, within IAI46_06880at 1459.144 kb on + strand, within IAI46_06880at 1459.144 kb on + strand, within IAI46_06880at 1459.145 kb on - strand, within IAI46_06880at 1459.145 kb on - strand, within IAI46_06880at 1459.145 kb on - strand, within IAI46_06880at 1459.145 kb on - strand, within IAI46_06880at 1459.145 kb on - strand, within IAI46_06880at 1459.145 kb on - strand, within IAI46_06880at 1459.145 kb on - strand, within IAI46_06880at 1459.148 kb on + strand, within IAI46_06880at 1459.148 kb on + strand, within IAI46_06880at 1459.149 kb on - strand, within IAI46_06880at 1459.184 kb on + strand, within IAI46_06880at 1459.187 kb on - strand, within IAI46_06880at 1459.187 kb on - strand, within IAI46_06880at 1459.187 kb on - strand, within IAI46_06880at 1459.187 kb on - strand, within IAI46_06880at 1459.190 kb on + strand, within IAI46_06880at 1459.198 kb on + strand, within IAI46_06880at 1459.198 kb on + strand, within IAI46_06880at 1459.256 kb on - strand, within IAI46_06880at 1459.256 kb on - strand, within IAI46_06880at 1459.259 kb on + strand, within IAI46_06880at 1459.259 kb on + strand, within IAI46_06880at 1459.260 kb on - strand, within IAI46_06880at 1459.260 kb on - strand, within IAI46_06880at 1459.260 kb on - strand, within IAI46_06880at 1459.294 kb on + strand, within IAI46_06880at 1459.294 kb on + strand, within IAI46_06880at 1459.295 kb on - strand, within IAI46_06880at 1459.295 kb on - strand, within IAI46_06880at 1459.364 kb on + strand, within IAI46_06880at 1459.365 kb on - strand, within IAI46_06880at 1459.374 kb on + strand, within IAI46_06880at 1459.375 kb on - strand, within IAI46_06880at 1459.517 kb on - strand, within IAI46_06880at 1459.525 kb on + strand, within IAI46_06880at 1459.839 kb on + strandat 1459.839 kb on + strandat 1459.839 kb on + strandat 1459.846 kb on + strandat 1459.847 kb on - strandat 1459.847 kb on - strandat 1459.854 kb on - strandat 1459.925 kb on + strandat 1459.925 kb on + strandat 1459.926 kb on - strandat 1459.955 kb on + strandat 1459.955 kb on + strandat 1459.955 kb on + strandat 1459.956 kb on - strandat 1459.956 kb on - strandat 1459.956 kb on - strandat 1459.956 kb on - strandat 1459.985 kb on + strandat 1459.985 kb on + strandat 1460.079 kb on - strand, within IAI46_06885at 1460.247 kb on + strand, within IAI46_06885at 1460.263 kb on - strand, within IAI46_06885at 1460.336 kb on + strand, within IAI46_06885at 1460.409 kb on - strand, within IAI46_06885at 1460.447 kb on + strandat 1460.448 kb on - strandat 1460.448 kb on - strandat 1460.476 kb on - strandat 1460.764 kb on + strand, within IAI46_06890at 1460.764 kb on + strand, within IAI46_06890at 1460.764 kb on + strand, within IAI46_06890at 1460.764 kb on + strand, within IAI46_06890at 1460.764 kb on + strand, within IAI46_06890at 1460.774 kb on + strand, within IAI46_06890at 1460.875 kb on + strand, within IAI46_06890at 1460.882 kb on + strand, within IAI46_06890at 1460.883 kb on - strand, within IAI46_06890at 1460.883 kb on - strand, within IAI46_06890at 1460.999 kb on + strandat 1461.055 kb on + strandat 1461.055 kb on + strandat 1461.059 kb on + strandat 1461.059 kb on + strandat 1461.060 kb on - strandat 1461.060 kb on - strandat 1461.060 kb on - strandat 1461.060 kb on - strandat 1461.060 kb on - strandat 1461.121 kb on + strandat 1461.174 kb on - strandat 1461.224 kb on + strandat 1461.255 kb on + strand, within IAI46_06895at 1461.255 kb on + strand, within IAI46_06895at 1461.256 kb on - strand, within IAI46_06895at 1461.363 kb on - strand, within IAI46_06895at 1461.378 kb on + strand, within IAI46_06895at 1461.378 kb on + strand, within IAI46_06895at 1461.380 kb on + strand, within IAI46_06895at 1461.397 kb on - strand, within IAI46_06895at 1461.418 kb on + strand, within IAI46_06895at 1461.418 kb on + strand, within IAI46_06895at 1461.419 kb on - strand, within IAI46_06895at 1461.419 kb on - strand, within IAI46_06895at 1461.419 kb on - strand, within IAI46_06895at 1461.422 kb on + strand, within IAI46_06895at 1461.423 kb on - strand, within IAI46_06895at 1461.423 kb on - strand, within IAI46_06895at 1461.423 kb on - strand, within IAI46_06895at 1461.423 kb on - strand, within IAI46_06895

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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1,459,057 + +0.0
1,459,065 - +0.4
1,459,089 - +0.3
1,459,089 - -0.3
1,459,098 - IAI46_06880 0.10 -0.3
1,459,119 + IAI46_06880 0.13 +0.2
1,459,142 + IAI46_06880 0.15 +1.1
1,459,142 + IAI46_06880 0.15 -0.1
1,459,143 - IAI46_06880 0.15 -0.4
1,459,144 + IAI46_06880 0.16 -0.3
1,459,144 + IAI46_06880 0.16 +1.7
1,459,144 + IAI46_06880 0.16 +0.9
1,459,144 + IAI46_06880 0.16 +0.4
1,459,144 + IAI46_06880 0.16 +1.2
1,459,144 + IAI46_06880 0.16 -0.4
1,459,145 - IAI46_06880 0.16 +0.7
1,459,145 - IAI46_06880 0.16 -1.7
1,459,145 - IAI46_06880 0.16 +0.4
1,459,145 - IAI46_06880 0.16 -0.7
1,459,145 - IAI46_06880 0.16 +1.0
1,459,145 - IAI46_06880 0.16 -0.7
1,459,145 - IAI46_06880 0.16 +0.1
1,459,148 + IAI46_06880 0.16 +1.2
1,459,148 + IAI46_06880 0.16 +0.7
1,459,149 - IAI46_06880 0.16 +0.4
1,459,184 + IAI46_06880 0.20 -0.3
1,459,187 - IAI46_06880 0.21 +0.8
1,459,187 - IAI46_06880 0.21 +0.1
1,459,187 - IAI46_06880 0.21 +0.0
1,459,187 - IAI46_06880 0.21 -0.1
1,459,190 + IAI46_06880 0.21 +1.6
1,459,198 + IAI46_06880 0.22 +1.2
1,459,198 + IAI46_06880 0.22 +0.5
1,459,256 - IAI46_06880 0.29 -0.2
1,459,256 - IAI46_06880 0.29 -0.7
1,459,259 + IAI46_06880 0.29 +0.7
1,459,259 + IAI46_06880 0.29 -0.6
1,459,260 - IAI46_06880 0.29 -0.3
1,459,260 - IAI46_06880 0.29 -0.5
1,459,260 - IAI46_06880 0.29 -0.0
1,459,294 + IAI46_06880 0.33 +0.2
1,459,294 + IAI46_06880 0.33 +0.6
1,459,295 - IAI46_06880 0.34 +0.2
1,459,295 - IAI46_06880 0.34 +0.9
1,459,364 + IAI46_06880 0.42 +0.1
1,459,365 - IAI46_06880 0.42 +0.1
1,459,374 + IAI46_06880 0.43 +1.0
1,459,375 - IAI46_06880 0.43 -0.9
1,459,517 - IAI46_06880 0.60 +1.0
1,459,525 + IAI46_06880 0.61 +0.6
1,459,839 + +0.0
1,459,839 + -1.0
1,459,839 + -0.5
1,459,846 + -0.2
1,459,847 - -0.4
1,459,847 - +0.2
1,459,854 - -0.2
1,459,925 + -0.2
1,459,925 + +0.5
1,459,926 - -0.8
1,459,955 + -0.4
1,459,955 + +0.1
1,459,955 + +1.1
1,459,956 - +0.2
1,459,956 - -0.3
1,459,956 - -0.7
1,459,956 - +0.6
1,459,985 + +0.7
1,459,985 + +0.1
1,460,079 - IAI46_06885 0.23 -0.3
1,460,247 + IAI46_06885 0.54 -1.1
1,460,263 - IAI46_06885 0.57 -0.5
1,460,336 + IAI46_06885 0.70 +0.5
1,460,409 - IAI46_06885 0.84 +0.8
1,460,447 + +0.4
1,460,448 - -0.0
1,460,448 - -0.5
1,460,476 - -1.1
1,460,764 + IAI46_06890 0.58 -0.6
1,460,764 + IAI46_06890 0.58 +0.4
1,460,764 + IAI46_06890 0.58 +0.6
1,460,764 + IAI46_06890 0.58 -1.0
1,460,764 + IAI46_06890 0.58 -2.5
1,460,774 + IAI46_06890 0.60 -1.2
1,460,875 + IAI46_06890 0.81 -0.3
1,460,882 + IAI46_06890 0.83 -1.0
1,460,883 - IAI46_06890 0.83 +0.6
1,460,883 - IAI46_06890 0.83 +0.8
1,460,999 + -1.2
1,461,055 + -0.4
1,461,055 + -0.4
1,461,059 + +0.9
1,461,059 + -1.3
1,461,060 - -1.9
1,461,060 - +0.4
1,461,060 - -0.5
1,461,060 - +1.2
1,461,060 - -2.0
1,461,121 + +0.4
1,461,174 - +0.2
1,461,224 + -0.2
1,461,255 + IAI46_06895 0.15 +1.7
1,461,255 + IAI46_06895 0.15 -0.7
1,461,256 - IAI46_06895 0.15 -0.4
1,461,363 - IAI46_06895 0.33 +1.1
1,461,378 + IAI46_06895 0.36 +0.2
1,461,378 + IAI46_06895 0.36 +0.9
1,461,380 + IAI46_06895 0.36 +0.9
1,461,397 - IAI46_06895 0.39 -0.1
1,461,418 + IAI46_06895 0.42 +0.6
1,461,418 + IAI46_06895 0.42 +0.3
1,461,419 - IAI46_06895 0.42 -0.6
1,461,419 - IAI46_06895 0.42 +0.1
1,461,419 - IAI46_06895 0.42 -0.2
1,461,422 + IAI46_06895 0.43 -0.4
1,461,423 - IAI46_06895 0.43 -0.8
1,461,423 - IAI46_06895 0.43 +0.2
1,461,423 - IAI46_06895 0.43 +0.0
1,461,423 - IAI46_06895 0.43 +0.2

Or see this region's nucleotide sequence