Strain Fitness in Serratia liquefaciens MT49 around IAI46_06735

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06730 and IAI46_06735 are separated by 190 nucleotidesIAI46_06735 and IAI46_06740 are separated by 62 nucleotidesIAI46_06740 and IAI46_06745 are separated by 161 nucleotides IAI46_06730: IAI46_06730 - O-antigen ligase C-terminal domain-containing protein, at 1,429,970 to 1,431,676 _06730 IAI46_06735: IAI46_06735 - LuxR family transcriptional regulator, at 1,431,867 to 1,432,424 _06735 IAI46_06740: IAI46_06740 - hypothetical protein, at 1,432,487 to 1,432,657 _06740 IAI46_06745: IAI46_06745 - arylamine N-acetyltransferase, at 1,432,819 to 1,433,580 _06745 Position (kb) 1431 1432 1433Strain fitness (log2 ratio) -1 0 1 2at 1430.914 kb on - strand, within IAI46_06730at 1430.970 kb on + strand, within IAI46_06730at 1430.971 kb on - strand, within IAI46_06730at 1431.091 kb on + strand, within IAI46_06730at 1431.165 kb on - strand, within IAI46_06730at 1431.174 kb on - strand, within IAI46_06730at 1431.264 kb on + strand, within IAI46_06730at 1431.345 kb on + strand, within IAI46_06730at 1431.346 kb on - strand, within IAI46_06730at 1431.507 kb on - strandat 1431.528 kb on - strandat 1431.575 kb on - strandat 1431.582 kb on - strandat 1431.596 kb on + strandat 1431.596 kb on + strandat 1431.597 kb on - strandat 1431.634 kb on - strandat 1431.684 kb on - strandat 1431.689 kb on + strandat 1431.689 kb on + strandat 1431.689 kb on + strandat 1431.690 kb on - strandat 1431.691 kb on + strandat 1431.691 kb on + strandat 1431.691 kb on + strandat 1431.692 kb on - strandat 1431.700 kb on + strandat 1431.701 kb on - strandat 1431.748 kb on + strandat 1431.748 kb on + strandat 1431.749 kb on - strandat 1431.749 kb on - strandat 1431.749 kb on - strandat 1431.749 kb on - strandat 1431.749 kb on - strandat 1431.749 kb on - strandat 1431.753 kb on - strandat 1431.756 kb on + strandat 1431.757 kb on - strandat 1431.814 kb on + strandat 1431.827 kb on - strandat 1431.917 kb on - strandat 1431.946 kb on - strand, within IAI46_06735at 1432.009 kb on + strand, within IAI46_06735at 1432.128 kb on + strand, within IAI46_06735at 1432.129 kb on - strand, within IAI46_06735at 1432.199 kb on - strand, within IAI46_06735at 1432.279 kb on + strand, within IAI46_06735at 1432.376 kb on - strandat 1432.379 kb on + strandat 1432.540 kb on + strand, within IAI46_06740at 1432.541 kb on - strand, within IAI46_06740at 1432.541 kb on - strand, within IAI46_06740at 1432.563 kb on - strand, within IAI46_06740at 1432.623 kb on + strand, within IAI46_06740at 1432.698 kb on + strandat 1432.710 kb on + strandat 1432.710 kb on + strandat 1432.750 kb on + strandat 1432.750 kb on + strandat 1432.750 kb on + strandat 1432.750 kb on + strandat 1432.751 kb on - strandat 1432.751 kb on - strandat 1432.751 kb on - strandat 1432.751 kb on - strandat 1432.751 kb on - strandat 1432.754 kb on + strandat 1432.754 kb on + strandat 1432.754 kb on + strandat 1432.755 kb on - strandat 1432.755 kb on - strandat 1432.755 kb on - strandat 1432.755 kb on - strandat 1432.771 kb on - strandat 1432.771 kb on - strandat 1432.789 kb on + strandat 1432.789 kb on + strandat 1432.812 kb on + strandat 1432.812 kb on + strandat 1432.812 kb on + strandat 1432.812 kb on + strandat 1432.812 kb on + strandat 1432.812 kb on + strandat 1432.813 kb on - strandat 1433.117 kb on + strand, within IAI46_06745at 1433.117 kb on + strand, within IAI46_06745at 1433.120 kb on + strand, within IAI46_06745at 1433.120 kb on + strand, within IAI46_06745at 1433.251 kb on + strand, within IAI46_06745at 1433.252 kb on - strand, within IAI46_06745at 1433.319 kb on + strand, within IAI46_06745at 1433.379 kb on - strand, within IAI46_06745

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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1,430,914 - IAI46_06730 0.55 -0.7
1,430,970 + IAI46_06730 0.59 -1.0
1,430,971 - IAI46_06730 0.59 -0.4
1,431,091 + IAI46_06730 0.66 +0.7
1,431,165 - IAI46_06730 0.70 -1.4
1,431,174 - IAI46_06730 0.71 +2.1
1,431,264 + IAI46_06730 0.76 +0.6
1,431,345 + IAI46_06730 0.81 +0.3
1,431,346 - IAI46_06730 0.81 -0.6
1,431,507 - +0.4
1,431,528 - -0.4
1,431,575 - +0.2
1,431,582 - -0.6
1,431,596 + -0.2
1,431,596 + -0.3
1,431,597 - +0.3
1,431,634 - -0.8
1,431,684 - -0.3
1,431,689 + +1.7
1,431,689 + +0.7
1,431,689 + +0.3
1,431,690 - -0.1
1,431,691 + +1.4
1,431,691 + -0.1
1,431,691 + +1.3
1,431,692 - -0.5
1,431,700 + +0.1
1,431,701 - +0.4
1,431,748 + -0.2
1,431,748 + +0.9
1,431,749 - +0.4
1,431,749 - +0.5
1,431,749 - +0.3
1,431,749 - +2.6
1,431,749 - -0.5
1,431,749 - -0.4
1,431,753 - -0.3
1,431,756 + +0.5
1,431,757 - +0.3
1,431,814 + +0.9
1,431,827 - +1.4
1,431,917 - -0.7
1,431,946 - IAI46_06735 0.14 -0.3
1,432,009 + IAI46_06735 0.25 -0.6
1,432,128 + IAI46_06735 0.47 +0.2
1,432,129 - IAI46_06735 0.47 -1.4
1,432,199 - IAI46_06735 0.59 +0.6
1,432,279 + IAI46_06735 0.74 -1.1
1,432,376 - -0.0
1,432,379 + +1.7
1,432,540 + IAI46_06740 0.31 +0.5
1,432,541 - IAI46_06740 0.32 +0.2
1,432,541 - IAI46_06740 0.32 +0.1
1,432,563 - IAI46_06740 0.44 -0.6
1,432,623 + IAI46_06740 0.80 +1.0
1,432,698 + +0.1
1,432,710 + +1.0
1,432,710 + -0.9
1,432,750 + +0.6
1,432,750 + -1.5
1,432,750 + +0.5
1,432,750 + +0.7
1,432,751 - -0.6
1,432,751 - -0.8
1,432,751 - -0.1
1,432,751 - -0.4
1,432,751 - -0.2
1,432,754 + -0.6
1,432,754 + +0.2
1,432,754 + -0.9
1,432,755 - +0.3
1,432,755 - -0.0
1,432,755 - -1.0
1,432,755 - +0.0
1,432,771 - +1.2
1,432,771 - -0.3
1,432,789 + -0.1
1,432,789 + +0.7
1,432,812 + +0.2
1,432,812 + +1.0
1,432,812 + -0.4
1,432,812 + +0.6
1,432,812 + -0.8
1,432,812 + +0.3
1,432,813 - +0.9
1,433,117 + IAI46_06745 0.39 +0.1
1,433,117 + IAI46_06745 0.39 +1.1
1,433,120 + IAI46_06745 0.40 +0.4
1,433,120 + IAI46_06745 0.40 +0.8
1,433,251 + IAI46_06745 0.57 +1.3
1,433,252 - IAI46_06745 0.57 +0.1
1,433,319 + IAI46_06745 0.66 +0.1
1,433,379 - IAI46_06745 0.73 -0.1

Or see this region's nucleotide sequence