Strain Fitness in Serratia liquefaciens MT49 around IAI46_06645

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06635 and IAI46_06640 are separated by 12 nucleotidesIAI46_06640 and IAI46_06645 are separated by 25 nucleotidesIAI46_06645 and IAI46_06650 are separated by 80 nucleotides IAI46_06635: IAI46_06635 - IclR family transcriptional regulator, at 1,414,204 to 1,414,983 _06635 IAI46_06640: IAI46_06640 - universal stress protein, at 1,414,996 to 1,415,445 _06640 IAI46_06645: IAI46_06645 - D-2-hydroxyacid dehydrogenase family protein, at 1,415,471 to 1,416,430 _06645 IAI46_06650: IAI46_06650 - tRNA dihydrouridine(16) synthase DusC, at 1,416,511 to 1,417,440 _06650 Position (kb) 1415 1416 1417Strain fitness (log2 ratio) -2 -1 0 1at 1414.512 kb on + strand, within IAI46_06635at 1414.526 kb on + strand, within IAI46_06635at 1414.527 kb on - strand, within IAI46_06635at 1414.630 kb on + strand, within IAI46_06635at 1414.630 kb on + strand, within IAI46_06635at 1414.630 kb on + strand, within IAI46_06635at 1414.630 kb on + strand, within IAI46_06635at 1414.630 kb on + strand, within IAI46_06635at 1414.705 kb on + strand, within IAI46_06635at 1414.790 kb on - strand, within IAI46_06635at 1414.845 kb on + strand, within IAI46_06635at 1414.846 kb on - strand, within IAI46_06635at 1415.040 kb on + strandat 1415.099 kb on + strand, within IAI46_06640at 1415.099 kb on + strand, within IAI46_06640at 1415.099 kb on + strand, within IAI46_06640at 1415.100 kb on - strand, within IAI46_06640at 1415.120 kb on - strand, within IAI46_06640at 1415.138 kb on - strand, within IAI46_06640at 1415.210 kb on + strand, within IAI46_06640at 1415.268 kb on - strand, within IAI46_06640at 1415.268 kb on - strand, within IAI46_06640at 1415.307 kb on + strand, within IAI46_06640at 1415.331 kb on + strand, within IAI46_06640at 1415.331 kb on + strand, within IAI46_06640at 1415.331 kb on + strand, within IAI46_06640at 1415.332 kb on - strand, within IAI46_06640at 1415.334 kb on + strand, within IAI46_06640at 1415.399 kb on + strand, within IAI46_06640at 1415.501 kb on + strandat 1415.502 kb on - strandat 1415.502 kb on - strandat 1415.837 kb on - strand, within IAI46_06645at 1416.052 kb on + strand, within IAI46_06645at 1416.099 kb on + strand, within IAI46_06645at 1416.335 kb on + strandat 1416.335 kb on + strandat 1416.349 kb on + strandat 1416.350 kb on - strandat 1416.354 kb on - strandat 1416.429 kb on - strandat 1416.440 kb on - strandat 1416.468 kb on + strandat 1416.478 kb on + strandat 1416.479 kb on - strandat 1416.518 kb on + strandat 1416.519 kb on - strandat 1416.586 kb on + strandat 1416.728 kb on - strand, within IAI46_06650at 1416.779 kb on - strand, within IAI46_06650at 1416.869 kb on - strand, within IAI46_06650at 1417.021 kb on - strand, within IAI46_06650at 1417.036 kb on + strand, within IAI46_06650at 1417.312 kb on + strand, within IAI46_06650at 1417.313 kb on - strand, within IAI46_06650at 1417.349 kb on + strandat 1417.350 kb on - strandat 1417.350 kb on - strandat 1417.350 kb on - strandat 1417.353 kb on + strandat 1417.360 kb on + strandat 1417.405 kb on - strandat 1417.416 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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1,414,512 + IAI46_06635 0.39 +0.4
1,414,526 + IAI46_06635 0.41 +0.4
1,414,527 - IAI46_06635 0.41 +1.2
1,414,630 + IAI46_06635 0.55 -0.8
1,414,630 + IAI46_06635 0.55 -2.2
1,414,630 + IAI46_06635 0.55 -0.3
1,414,630 + IAI46_06635 0.55 +0.7
1,414,630 + IAI46_06635 0.55 -0.6
1,414,705 + IAI46_06635 0.64 -0.1
1,414,790 - IAI46_06635 0.75 +0.0
1,414,845 + IAI46_06635 0.82 +1.4
1,414,846 - IAI46_06635 0.82 +0.6
1,415,040 + -1.1
1,415,099 + IAI46_06640 0.23 -1.7
1,415,099 + IAI46_06640 0.23 +1.2
1,415,099 + IAI46_06640 0.23 -0.4
1,415,100 - IAI46_06640 0.23 +1.1
1,415,120 - IAI46_06640 0.28 +1.5
1,415,138 - IAI46_06640 0.32 -0.3
1,415,210 + IAI46_06640 0.48 -0.4
1,415,268 - IAI46_06640 0.60 +0.7
1,415,268 - IAI46_06640 0.60 +0.2
1,415,307 + IAI46_06640 0.69 +0.3
1,415,331 + IAI46_06640 0.74 -0.4
1,415,331 + IAI46_06640 0.74 +0.3
1,415,331 + IAI46_06640 0.74 +1.2
1,415,332 - IAI46_06640 0.75 +0.4
1,415,334 + IAI46_06640 0.75 -0.4
1,415,399 + IAI46_06640 0.90 -0.6
1,415,501 + -2.4
1,415,502 - +0.6
1,415,502 - +0.7
1,415,837 - IAI46_06645 0.38 +0.9
1,416,052 + IAI46_06645 0.61 -0.2
1,416,099 + IAI46_06645 0.65 +0.7
1,416,335 + -0.4
1,416,335 + -0.1
1,416,349 + -1.1
1,416,350 - +0.5
1,416,354 - -0.2
1,416,429 - +0.3
1,416,440 - -0.1
1,416,468 + -0.1
1,416,478 + +0.9
1,416,479 - -1.6
1,416,518 + +1.7
1,416,519 - -0.4
1,416,586 + +0.0
1,416,728 - IAI46_06650 0.23 +0.6
1,416,779 - IAI46_06650 0.29 -1.8
1,416,869 - IAI46_06650 0.38 +0.7
1,417,021 - IAI46_06650 0.55 -0.4
1,417,036 + IAI46_06650 0.56 +1.5
1,417,312 + IAI46_06650 0.86 -1.4
1,417,313 - IAI46_06650 0.86 +0.4
1,417,349 + -0.5
1,417,350 - -0.4
1,417,350 - -0.7
1,417,350 - +1.0
1,417,353 + -0.4
1,417,360 + -0.6
1,417,405 - -1.3
1,417,416 + -2.1

Or see this region's nucleotide sequence