Strain Fitness in Serratia liquefaciens MT49 around IAI46_06160

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06150 and IAI46_06155 overlap by 1 nucleotidesIAI46_06155 and IAI46_06160 are separated by 69 nucleotidesIAI46_06160 and IAI46_06165 are separated by 18 nucleotides IAI46_06150: IAI46_06150 - helix-turn-helix transcriptional regulator, at 1,316,546 to 1,317,208 _06150 IAI46_06155: IAI46_06155 - DUF3861 domain-containing protein, at 1,317,208 to 1,317,507 _06155 IAI46_06160: IAI46_06160 - two-component system response regulator KdpE, at 1,317,577 to 1,318,266 _06160 IAI46_06165: IAI46_06165 - two-component system sensor histidine kinase KdbD, at 1,318,285 to 1,320,978 _06165 Position (kb) 1317 1318 1319Strain fitness (log2 ratio) -1 0 1 2 3at 1316.819 kb on + strand, within IAI46_06150at 1316.819 kb on + strand, within IAI46_06150at 1316.819 kb on + strand, within IAI46_06150at 1317.187 kb on + strandat 1317.188 kb on - strandat 1317.188 kb on - strandat 1317.231 kb on + strandat 1317.313 kb on - strand, within IAI46_06155at 1317.669 kb on + strand, within IAI46_06160at 1317.669 kb on + strand, within IAI46_06160at 1317.671 kb on + strand, within IAI46_06160at 1317.701 kb on + strand, within IAI46_06160at 1317.724 kb on + strand, within IAI46_06160at 1317.724 kb on + strand, within IAI46_06160at 1317.724 kb on + strand, within IAI46_06160at 1317.725 kb on - strand, within IAI46_06160at 1317.725 kb on - strand, within IAI46_06160at 1317.725 kb on - strand, within IAI46_06160at 1317.727 kb on + strand, within IAI46_06160at 1317.728 kb on - strand, within IAI46_06160at 1317.962 kb on + strand, within IAI46_06160at 1317.962 kb on + strand, within IAI46_06160at 1317.963 kb on - strand, within IAI46_06160at 1317.963 kb on - strand, within IAI46_06160at 1318.065 kb on + strand, within IAI46_06160at 1318.066 kb on - strand, within IAI46_06160at 1318.066 kb on - strand, within IAI46_06160at 1318.067 kb on + strand, within IAI46_06160at 1318.067 kb on + strand, within IAI46_06160at 1318.068 kb on - strand, within IAI46_06160at 1318.071 kb on + strand, within IAI46_06160at 1318.072 kb on - strand, within IAI46_06160at 1318.072 kb on - strand, within IAI46_06160at 1318.287 kb on - strandat 1318.309 kb on + strandat 1318.458 kb on + strandat 1318.485 kb on + strandat 1318.486 kb on - strandat 1318.578 kb on + strand, within IAI46_06165at 1318.578 kb on + strand, within IAI46_06165at 1318.578 kb on + strand, within IAI46_06165at 1318.579 kb on - strand, within IAI46_06165at 1318.579 kb on - strand, within IAI46_06165at 1318.616 kb on - strand, within IAI46_06165at 1318.776 kb on + strand, within IAI46_06165at 1318.776 kb on + strand, within IAI46_06165at 1318.841 kb on - strand, within IAI46_06165at 1319.184 kb on - strand, within IAI46_06165at 1319.184 kb on - strand, within IAI46_06165

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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1,316,819 + IAI46_06150 0.41 -0.1
1,316,819 + IAI46_06150 0.41 +1.5
1,316,819 + IAI46_06150 0.41 +1.5
1,317,187 + -1.6
1,317,188 - +0.4
1,317,188 - -1.5
1,317,231 + -1.4
1,317,313 - IAI46_06155 0.35 -0.7
1,317,669 + IAI46_06160 0.13 +0.3
1,317,669 + IAI46_06160 0.13 -1.7
1,317,671 + IAI46_06160 0.14 -0.6
1,317,701 + IAI46_06160 0.18 -0.3
1,317,724 + IAI46_06160 0.21 +0.6
1,317,724 + IAI46_06160 0.21 -0.1
1,317,724 + IAI46_06160 0.21 +1.8
1,317,725 - IAI46_06160 0.21 +0.5
1,317,725 - IAI46_06160 0.21 -0.2
1,317,725 - IAI46_06160 0.21 -0.8
1,317,727 + IAI46_06160 0.22 +0.3
1,317,728 - IAI46_06160 0.22 -0.4
1,317,962 + IAI46_06160 0.56 +2.8
1,317,962 + IAI46_06160 0.56 -0.1
1,317,963 - IAI46_06160 0.56 -1.0
1,317,963 - IAI46_06160 0.56 +1.0
1,318,065 + IAI46_06160 0.71 +1.3
1,318,066 - IAI46_06160 0.71 +0.2
1,318,066 - IAI46_06160 0.71 -0.2
1,318,067 + IAI46_06160 0.71 +0.5
1,318,067 + IAI46_06160 0.71 +0.4
1,318,068 - IAI46_06160 0.71 +0.7
1,318,071 + IAI46_06160 0.72 +0.1
1,318,072 - IAI46_06160 0.72 +0.2
1,318,072 - IAI46_06160 0.72 +0.6
1,318,287 - -0.9
1,318,309 + +0.0
1,318,458 + -0.8
1,318,485 + +0.9
1,318,486 - +1.2
1,318,578 + IAI46_06165 0.11 -0.1
1,318,578 + IAI46_06165 0.11 -0.3
1,318,578 + IAI46_06165 0.11 +0.2
1,318,579 - IAI46_06165 0.11 +1.2
1,318,579 - IAI46_06165 0.11 +0.4
1,318,616 - IAI46_06165 0.12 -0.7
1,318,776 + IAI46_06165 0.18 +0.1
1,318,776 + IAI46_06165 0.18 -0.6
1,318,841 - IAI46_06165 0.21 -0.3
1,319,184 - IAI46_06165 0.33 +0.2
1,319,184 - IAI46_06165 0.33 +0.6

Or see this region's nucleotide sequence