Strain Fitness in Serratia liquefaciens MT49 around IAI46_06100

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06095 and IAI46_06100 are separated by 251 nucleotidesIAI46_06100 and IAI46_06105 are separated by 578 nucleotides IAI46_06095: IAI46_06095 - PTS N-acetyl glucosamine transporter subunit IIABC, at 1,301,606 to 1,303,552 _06095 IAI46_06100: IAI46_06100 - glutamine--tRNA ligase, at 1,303,804 to 1,305,468 _06100 IAI46_06105: IAI46_06105 - outer membrane porin, OprD family, at 1,306,047 to 1,307,450 _06105 Position (kb) 1303 1304 1305 1306Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1302.964 kb on + strand, within IAI46_06095at 1302.988 kb on + strand, within IAI46_06095at 1303.059 kb on + strand, within IAI46_06095at 1303.078 kb on + strand, within IAI46_06095at 1303.131 kb on + strand, within IAI46_06095at 1303.131 kb on + strand, within IAI46_06095at 1303.132 kb on - strand, within IAI46_06095at 1303.132 kb on - strand, within IAI46_06095at 1303.210 kb on + strand, within IAI46_06095at 1303.446 kb on + strandat 1303.447 kb on - strandat 1303.478 kb on + strandat 1303.479 kb on - strandat 1303.551 kb on - strandat 1303.560 kb on + strandat 1303.569 kb on - strandat 1303.569 kb on - strandat 1303.569 kb on - strandat 1303.569 kb on - strandat 1303.658 kb on - strandat 1303.763 kb on + strandat 1305.474 kb on - strandat 1305.489 kb on + strandat 1305.489 kb on + strandat 1305.534 kb on - strandat 1305.557 kb on - strandat 1305.557 kb on - strandat 1305.576 kb on + strandat 1305.616 kb on + strandat 1305.616 kb on + strandat 1305.633 kb on - strandat 1305.754 kb on - strandat 1305.910 kb on + strandat 1305.916 kb on + strandat 1305.917 kb on - strandat 1305.917 kb on - strandat 1305.917 kb on - strandat 1305.933 kb on + strandat 1306.019 kb on + strandat 1306.070 kb on + strandat 1306.147 kb on + strandat 1306.152 kb on - strandat 1306.152 kb on - strandat 1306.180 kb on + strandat 1306.181 kb on - strandat 1306.181 kb on - strandat 1306.181 kb on - strandat 1306.182 kb on + strandat 1306.182 kb on + strandat 1306.183 kb on - strandat 1306.183 kb on - strandat 1306.183 kb on - strandat 1306.183 kb on - strandat 1306.185 kb on + strandat 1306.186 kb on - strandat 1306.245 kb on + strand, within IAI46_06105at 1306.245 kb on + strand, within IAI46_06105at 1306.246 kb on - strand, within IAI46_06105at 1306.303 kb on - strand, within IAI46_06105at 1306.413 kb on - strand, within IAI46_06105at 1306.416 kb on + strand, within IAI46_06105at 1306.416 kb on + strand, within IAI46_06105at 1306.417 kb on - strand, within IAI46_06105at 1306.417 kb on - strand, within IAI46_06105at 1306.428 kb on + strand, within IAI46_06105at 1306.429 kb on - strand, within IAI46_06105at 1306.459 kb on - strand, within IAI46_06105at 1306.460 kb on + strand, within IAI46_06105at 1306.460 kb on + strand, within IAI46_06105at 1306.460 kb on + strand, within IAI46_06105at 1306.460 kb on + strand, within IAI46_06105at 1306.461 kb on - strand, within IAI46_06105at 1306.461 kb on - strand, within IAI46_06105

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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1,302,964 + IAI46_06095 0.70 -0.5
1,302,988 + IAI46_06095 0.71 -0.9
1,303,059 + IAI46_06095 0.75 -0.8
1,303,078 + IAI46_06095 0.76 -0.4
1,303,131 + IAI46_06095 0.78 -0.3
1,303,131 + IAI46_06095 0.78 -0.6
1,303,132 - IAI46_06095 0.78 -0.1
1,303,132 - IAI46_06095 0.78 +0.0
1,303,210 + IAI46_06095 0.82 -0.3
1,303,446 + -0.5
1,303,447 - -0.2
1,303,478 + -0.3
1,303,479 - +0.4
1,303,551 - -0.5
1,303,560 + +0.0
1,303,569 - +0.7
1,303,569 - -0.7
1,303,569 - +2.1
1,303,569 - +0.5
1,303,658 - +1.0
1,303,763 + +1.0
1,305,474 - +0.3
1,305,489 + +2.0
1,305,489 + -0.7
1,305,534 - +0.5
1,305,557 - +0.1
1,305,557 - +1.2
1,305,576 + +0.8
1,305,616 + -1.5
1,305,616 + -1.2
1,305,633 - +0.5
1,305,754 - -1.3
1,305,910 + +0.7
1,305,916 + -0.3
1,305,917 - +0.4
1,305,917 - +0.2
1,305,917 - -0.6
1,305,933 + +1.8
1,306,019 + +1.3
1,306,070 + -1.0
1,306,147 + -0.3
1,306,152 - -0.2
1,306,152 - +1.4
1,306,180 + -1.0
1,306,181 - +0.2
1,306,181 - -0.4
1,306,181 - -1.0
1,306,182 + +0.2
1,306,182 + -1.1
1,306,183 - -0.9
1,306,183 - -0.1
1,306,183 - -1.0
1,306,183 - +0.2
1,306,185 + -0.4
1,306,186 - -0.4
1,306,245 + IAI46_06105 0.14 +0.0
1,306,245 + IAI46_06105 0.14 +0.4
1,306,246 - IAI46_06105 0.14 +0.7
1,306,303 - IAI46_06105 0.18 +0.7
1,306,413 - IAI46_06105 0.26 +1.2
1,306,416 + IAI46_06105 0.26 +2.6
1,306,416 + IAI46_06105 0.26 +1.8
1,306,417 - IAI46_06105 0.26 -0.4
1,306,417 - IAI46_06105 0.26 +0.4
1,306,428 + IAI46_06105 0.27 +0.2
1,306,429 - IAI46_06105 0.27 +3.0
1,306,459 - IAI46_06105 0.29 -1.7
1,306,460 + IAI46_06105 0.29 +0.6
1,306,460 + IAI46_06105 0.29 +0.1
1,306,460 + IAI46_06105 0.29 -0.3
1,306,460 + IAI46_06105 0.29 +0.2
1,306,461 - IAI46_06105 0.29 -2.4
1,306,461 - IAI46_06105 0.29 -0.3

Or see this region's nucleotide sequence