Strain Fitness in Serratia liquefaciens MT49 around IAI46_05380

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_05370 and IAI46_05375 overlap by 4 nucleotidesIAI46_05375 and IAI46_05380 are separated by 166 nucleotidesIAI46_05380 and IAI46_05385 are separated by 10 nucleotidesIAI46_05385 and IAI46_05390 are separated by 309 nucleotides IAI46_05370: IAI46_05370 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 1,158,680 to 1,159,747 _05370 IAI46_05375: IAI46_05375 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 1,159,744 to 1,160,268 _05375 IAI46_05380: IAI46_05380 - UDP-2,3-diacylglucosamine diphosphatase, at 1,160,435 to 1,161,157 _05380 IAI46_05385: IAI46_05385 - peptidylprolyl isomerase B, at 1,161,168 to 1,161,662 _05385 IAI46_05390: IAI46_05390 - cysteine--tRNA ligase, at 1,161,972 to 1,163,357 _05390 Position (kb) 1160 1161 1162Strain fitness (log2 ratio) -2 -1 0 1at 1159.631 kb on + strand, within IAI46_05370at 1159.632 kb on - strand, within IAI46_05370at 1159.705 kb on + strandat 1159.705 kb on + strandat 1159.705 kb on + strandat 1159.706 kb on - strandat 1159.940 kb on + strand, within IAI46_05375at 1160.229 kb on + strandat 1160.230 kb on - strandat 1160.275 kb on - strandat 1160.291 kb on + strandat 1160.292 kb on - strandat 1160.345 kb on - strandat 1160.345 kb on - strandat 1160.345 kb on - strandat 1160.345 kb on - strandat 1160.437 kb on - strandat 1160.437 kb on - strandat 1160.437 kb on - strandat 1161.298 kb on - strand, within IAI46_05385at 1161.675 kb on - strandat 1161.730 kb on - strandat 1161.730 kb on - strandat 1161.730 kb on - strandat 1161.734 kb on + strandat 1161.735 kb on - strandat 1161.735 kb on - strandat 1161.735 kb on - strandat 1161.735 kb on - strandat 1161.735 kb on - strandat 1161.735 kb on - strandat 1161.735 kb on - strandat 1161.744 kb on - strandat 1161.744 kb on - strandat 1161.804 kb on + strandat 1161.828 kb on + strandat 1161.880 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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1,159,631 + IAI46_05370 0.89 -0.3
1,159,632 - IAI46_05370 0.89 +0.1
1,159,705 + -0.6
1,159,705 + -0.5
1,159,705 + -0.8
1,159,706 - +0.6
1,159,940 + IAI46_05375 0.37 -1.8
1,160,229 + -0.3
1,160,230 - -1.0
1,160,275 - -0.2
1,160,291 + -1.0
1,160,292 - +0.0
1,160,345 - +0.5
1,160,345 - -0.5
1,160,345 - -1.5
1,160,345 - -1.1
1,160,437 - -0.1
1,160,437 - +0.1
1,160,437 - +1.5
1,161,298 - IAI46_05385 0.26 +0.6
1,161,675 - +0.5
1,161,730 - -1.1
1,161,730 - -0.6
1,161,730 - +0.5
1,161,734 + -0.5
1,161,735 - -0.9
1,161,735 - +0.2
1,161,735 - -0.4
1,161,735 - +0.5
1,161,735 - +0.5
1,161,735 - -0.4
1,161,735 - -0.2
1,161,744 - -1.3
1,161,744 - +0.8
1,161,804 + +1.0
1,161,828 + +0.7
1,161,880 + +0.5

Or see this region's nucleotide sequence