Strain Fitness in Serratia liquefaciens MT49 around IAI46_04240

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_04230 and IAI46_04235 overlap by 4 nucleotidesIAI46_04235 and IAI46_04240 are separated by 27 nucleotidesIAI46_04240 and IAI46_04245 are separated by 146 nucleotides IAI46_04230: IAI46_04230 - AtzE family amidohydrolase, at 909,800 to 911,200 _04230 IAI46_04235: IAI46_04235 - oxalurate catabolism protein HpxX, at 911,197 to 911,388 _04235 IAI46_04240: IAI46_04240 - gamma-glutamyltransferase, at 911,416 to 913,002 _04240 IAI46_04245: IAI46_04245 - MurR/RpiR family transcriptional regulator, at 913,149 to 913,988 _04245 Position (kb) 911 912 913 914Strain fitness (log2 ratio) -2 -1 0 1 2at 910.515 kb on + strand, within IAI46_04230at 910.515 kb on + strand, within IAI46_04230at 910.516 kb on - strand, within IAI46_04230at 910.659 kb on - strand, within IAI46_04230at 910.748 kb on - strand, within IAI46_04230at 910.809 kb on + strand, within IAI46_04230at 910.810 kb on - strand, within IAI46_04230at 910.816 kb on - strand, within IAI46_04230at 910.825 kb on + strand, within IAI46_04230at 911.068 kb on + strandat 911.069 kb on - strandat 911.070 kb on + strandat 911.070 kb on + strandat 911.071 kb on - strandat 911.071 kb on - strandat 911.071 kb on - strandat 911.101 kb on + strandat 911.102 kb on - strandat 911.108 kb on + strandat 911.108 kb on + strandat 911.208 kb on - strandat 911.208 kb on - strandat 911.352 kb on + strand, within IAI46_04235at 911.352 kb on + strand, within IAI46_04235at 911.352 kb on + strand, within IAI46_04235at 911.352 kb on + strand, within IAI46_04235at 911.353 kb on - strand, within IAI46_04235at 911.353 kb on - strand, within IAI46_04235at 911.354 kb on + strand, within IAI46_04235at 911.354 kb on + strand, within IAI46_04235at 911.355 kb on - strand, within IAI46_04235at 911.355 kb on - strand, within IAI46_04235at 911.355 kb on - strand, within IAI46_04235at 911.475 kb on + strandat 911.517 kb on + strandat 911.562 kb on - strandat 911.562 kb on - strandat 911.744 kb on + strand, within IAI46_04240at 911.745 kb on - strand, within IAI46_04240at 911.745 kb on - strand, within IAI46_04240at 911.765 kb on + strand, within IAI46_04240at 911.765 kb on + strand, within IAI46_04240at 911.918 kb on + strand, within IAI46_04240at 911.919 kb on - strand, within IAI46_04240at 912.031 kb on - strand, within IAI46_04240at 912.311 kb on + strand, within IAI46_04240at 912.490 kb on + strand, within IAI46_04240at 912.491 kb on - strand, within IAI46_04240at 912.495 kb on - strand, within IAI46_04240at 912.495 kb on - strand, within IAI46_04240at 912.495 kb on - strand, within IAI46_04240at 912.534 kb on - strand, within IAI46_04240at 912.653 kb on + strand, within IAI46_04240at 912.654 kb on - strand, within IAI46_04240at 912.654 kb on - strand, within IAI46_04240at 912.658 kb on + strand, within IAI46_04240at 912.659 kb on - strand, within IAI46_04240at 912.860 kb on + strandat 912.996 kb on + strandat 912.997 kb on - strandat 913.079 kb on - strandat 913.079 kb on - strandat 913.110 kb on + strandat 913.110 kb on + strandat 913.111 kb on - strandat 913.132 kb on + strandat 913.288 kb on + strand, within IAI46_04245at 913.299 kb on - strand, within IAI46_04245at 913.338 kb on + strand, within IAI46_04245at 913.397 kb on + strand, within IAI46_04245at 913.440 kb on + strand, within IAI46_04245at 913.440 kb on + strand, within IAI46_04245at 913.441 kb on - strand, within IAI46_04245at 913.441 kb on - strand, within IAI46_04245at 913.463 kb on + strand, within IAI46_04245at 913.463 kb on + strand, within IAI46_04245at 913.464 kb on - strand, within IAI46_04245at 913.464 kb on - strand, within IAI46_04245at 913.464 kb on - strand, within IAI46_04245at 913.482 kb on - strand, within IAI46_04245at 913.540 kb on + strand, within IAI46_04245at 913.603 kb on + strand, within IAI46_04245at 913.618 kb on + strand, within IAI46_04245at 913.688 kb on - strand, within IAI46_04245at 913.857 kb on + strand, within IAI46_04245at 913.858 kb on - strand, within IAI46_04245

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
remove
910,515 + IAI46_04230 0.51 -2.3
910,515 + IAI46_04230 0.51 +0.5
910,516 - IAI46_04230 0.51 +0.7
910,659 - IAI46_04230 0.61 -0.1
910,748 - IAI46_04230 0.68 +0.9
910,809 + IAI46_04230 0.72 +0.2
910,810 - IAI46_04230 0.72 -0.6
910,816 - IAI46_04230 0.73 -0.6
910,825 + IAI46_04230 0.73 +1.3
911,068 + -1.6
911,069 - +0.7
911,070 + +0.1
911,070 + +1.2
911,071 - +0.6
911,071 - -0.0
911,071 - +0.1
911,101 + +1.1
911,102 - -0.7
911,108 + +0.2
911,108 + +0.2
911,208 - +0.1
911,208 - -0.4
911,352 + IAI46_04235 0.81 +0.4
911,352 + IAI46_04235 0.81 -0.2
911,352 + IAI46_04235 0.81 +0.1
911,352 + IAI46_04235 0.81 +0.3
911,353 - IAI46_04235 0.81 -0.0
911,353 - IAI46_04235 0.81 +0.0
911,354 + IAI46_04235 0.82 -0.1
911,354 + IAI46_04235 0.82 -0.8
911,355 - IAI46_04235 0.82 +1.3
911,355 - IAI46_04235 0.82 -0.2
911,355 - IAI46_04235 0.82 +1.5
911,475 + +0.2
911,517 + +0.8
911,562 - +0.4
911,562 - -0.2
911,744 + IAI46_04240 0.21 +0.3
911,745 - IAI46_04240 0.21 -0.2
911,745 - IAI46_04240 0.21 -1.7
911,765 + IAI46_04240 0.22 +1.0
911,765 + IAI46_04240 0.22 -0.4
911,918 + IAI46_04240 0.32 +0.7
911,919 - IAI46_04240 0.32 +1.4
912,031 - IAI46_04240 0.39 +0.1
912,311 + IAI46_04240 0.56 -0.2
912,490 + IAI46_04240 0.68 -0.8
912,491 - IAI46_04240 0.68 -0.3
912,495 - IAI46_04240 0.68 +0.5
912,495 - IAI46_04240 0.68 +0.1
912,495 - IAI46_04240 0.68 -0.1
912,534 - IAI46_04240 0.70 +1.6
912,653 + IAI46_04240 0.78 +0.4
912,654 - IAI46_04240 0.78 +0.3
912,654 - IAI46_04240 0.78 +0.2
912,658 + IAI46_04240 0.78 -0.4
912,659 - IAI46_04240 0.78 +0.2
912,860 + -0.0
912,996 + +0.3
912,997 - -0.4
913,079 - +0.1
913,079 - +0.1
913,110 + +1.9
913,110 + -0.8
913,111 - +0.9
913,132 + -1.3
913,288 + IAI46_04245 0.17 -1.7
913,299 - IAI46_04245 0.18 +0.8
913,338 + IAI46_04245 0.23 -0.2
913,397 + IAI46_04245 0.30 +1.1
913,440 + IAI46_04245 0.35 -1.0
913,440 + IAI46_04245 0.35 +0.3
913,441 - IAI46_04245 0.35 -0.5
913,441 - IAI46_04245 0.35 -0.9
913,463 + IAI46_04245 0.37 +0.7
913,463 + IAI46_04245 0.37 -0.1
913,464 - IAI46_04245 0.38 -1.0
913,464 - IAI46_04245 0.38 -0.6
913,464 - IAI46_04245 0.38 +0.6
913,482 - IAI46_04245 0.40 +1.2
913,540 + IAI46_04245 0.47 -0.2
913,603 + IAI46_04245 0.54 +0.2
913,618 + IAI46_04245 0.56 +0.2
913,688 - IAI46_04245 0.64 -0.1
913,857 + IAI46_04245 0.84 -0.3
913,858 - IAI46_04245 0.84 -0.2

Or see this region's nucleotide sequence