Strain Fitness in Serratia liquefaciens MT49 around IAI46_03325

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03320 and IAI46_03325 are separated by 90 nucleotidesIAI46_03325 and IAI46_03330 are separated by 159 nucleotides IAI46_03320: IAI46_03320 - HTH-type transcriptional regulator SgrR, at 716,903 to 718,564 _03320 IAI46_03325: IAI46_03325 - glucose uptake inhibitor SgrT, at 718,655 to 718,828 _03325 IAI46_03330: IAI46_03330 - MFS transporter, at 718,988 to 720,193 _03330 Position (kb) 718 719Strain fitness (log2 ratio) -2 -1 0 1at 717.664 kb on + strand, within IAI46_03320at 717.699 kb on + strand, within IAI46_03320at 717.752 kb on - strand, within IAI46_03320at 717.815 kb on + strand, within IAI46_03320at 717.816 kb on - strand, within IAI46_03320at 717.816 kb on - strand, within IAI46_03320at 717.816 kb on - strand, within IAI46_03320at 717.889 kb on - strand, within IAI46_03320at 717.889 kb on - strand, within IAI46_03320at 718.018 kb on - strand, within IAI46_03320at 718.094 kb on + strand, within IAI46_03320at 718.173 kb on + strand, within IAI46_03320at 718.173 kb on + strand, within IAI46_03320at 718.173 kb on + strand, within IAI46_03320at 718.188 kb on + strand, within IAI46_03320at 718.188 kb on + strand, within IAI46_03320at 718.188 kb on + strand, within IAI46_03320at 718.188 kb on + strand, within IAI46_03320at 718.188 kb on + strand, within IAI46_03320at 718.210 kb on + strand, within IAI46_03320at 718.351 kb on + strand, within IAI46_03320at 718.354 kb on - strand, within IAI46_03320at 718.354 kb on - strand, within IAI46_03320at 718.437 kb on - strandat 718.488 kb on - strandat 718.488 kb on - strandat 718.488 kb on - strandat 718.565 kb on - strandat 718.609 kb on + strandat 718.610 kb on - strandat 718.612 kb on - strandat 718.614 kb on + strandat 718.682 kb on + strand, within IAI46_03325at 718.682 kb on + strand, within IAI46_03325at 718.682 kb on + strand, within IAI46_03325at 718.811 kb on + strandat 718.812 kb on - strandat 718.856 kb on + strandat 718.886 kb on - strandat 718.886 kb on - strandat 718.887 kb on + strandat 718.887 kb on + strandat 718.888 kb on - strandat 718.888 kb on - strandat 718.888 kb on - strandat 718.888 kb on - strandat 718.888 kb on - strandat 718.888 kb on - strandat 718.948 kb on + strandat 718.949 kb on - strandat 718.969 kb on - strandat 718.987 kb on + strandat 719.021 kb on - strandat 719.107 kb on - strandat 719.120 kb on - strand, within IAI46_03330at 719.150 kb on + strand, within IAI46_03330at 719.151 kb on - strand, within IAI46_03330at 719.151 kb on - strand, within IAI46_03330at 719.151 kb on - strand, within IAI46_03330at 719.153 kb on - strand, within IAI46_03330at 719.294 kb on + strand, within IAI46_03330at 719.295 kb on - strand, within IAI46_03330at 719.308 kb on + strand, within IAI46_03330at 719.378 kb on + strand, within IAI46_03330at 719.378 kb on + strand, within IAI46_03330at 719.473 kb on + strand, within IAI46_03330at 719.473 kb on + strand, within IAI46_03330at 719.498 kb on - strand, within IAI46_03330at 719.498 kb on - strand, within IAI46_03330at 719.602 kb on + strand, within IAI46_03330at 719.708 kb on - strand, within IAI46_03330at 719.708 kb on - strand, within IAI46_03330at 719.708 kb on - strand, within IAI46_03330at 719.708 kb on - strand, within IAI46_03330at 719.714 kb on + strand, within IAI46_03330at 719.714 kb on + strand, within IAI46_03330at 719.721 kb on + strand, within IAI46_03330at 719.722 kb on - strand, within IAI46_03330at 719.735 kb on + strand, within IAI46_03330at 719.735 kb on + strand, within IAI46_03330at 719.736 kb on - strand, within IAI46_03330at 719.736 kb on - strand, within IAI46_03330at 719.736 kb on - strand, within IAI46_03330at 719.737 kb on + strand, within IAI46_03330at 719.738 kb on - strand, within IAI46_03330

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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717,664 + IAI46_03320 0.46 -2.0
717,699 + IAI46_03320 0.48 -0.7
717,752 - IAI46_03320 0.51 +0.4
717,815 + IAI46_03320 0.55 +0.2
717,816 - IAI46_03320 0.55 +0.3
717,816 - IAI46_03320 0.55 +0.6
717,816 - IAI46_03320 0.55 -0.2
717,889 - IAI46_03320 0.59 -1.1
717,889 - IAI46_03320 0.59 -0.4
718,018 - IAI46_03320 0.67 -0.3
718,094 + IAI46_03320 0.72 +0.9
718,173 + IAI46_03320 0.76 +0.4
718,173 + IAI46_03320 0.76 -1.8
718,173 + IAI46_03320 0.76 +0.4
718,188 + IAI46_03320 0.77 +0.5
718,188 + IAI46_03320 0.77 +1.5
718,188 + IAI46_03320 0.77 -0.6
718,188 + IAI46_03320 0.77 +0.0
718,188 + IAI46_03320 0.77 -0.4
718,210 + IAI46_03320 0.79 +0.3
718,351 + IAI46_03320 0.87 -0.5
718,354 - IAI46_03320 0.87 +0.7
718,354 - IAI46_03320 0.87 -1.0
718,437 - -0.8
718,488 - -0.4
718,488 - -0.5
718,488 - -0.9
718,565 - -0.8
718,609 + +0.6
718,610 - -0.1
718,612 - +0.3
718,614 + +0.1
718,682 + IAI46_03325 0.16 +1.1
718,682 + IAI46_03325 0.16 -0.4
718,682 + IAI46_03325 0.16 -0.5
718,811 + +0.1
718,812 - -0.1
718,856 + +0.4
718,886 - +1.0
718,886 - +0.4
718,887 + +0.1
718,887 + -0.6
718,888 - +0.6
718,888 - +0.4
718,888 - -0.7
718,888 - +0.3
718,888 - -0.1
718,888 - +0.6
718,948 + +0.1
718,949 - +0.6
718,969 - +0.2
718,987 + +0.4
719,021 - -0.3
719,107 - -0.0
719,120 - IAI46_03330 0.11 +0.8
719,150 + IAI46_03330 0.13 +0.2
719,151 - IAI46_03330 0.14 -0.6
719,151 - IAI46_03330 0.14 -1.2
719,151 - IAI46_03330 0.14 +0.2
719,153 - IAI46_03330 0.14 +0.8
719,294 + IAI46_03330 0.25 +0.1
719,295 - IAI46_03330 0.25 -2.2
719,308 + IAI46_03330 0.27 -0.6
719,378 + IAI46_03330 0.32 -0.2
719,378 + IAI46_03330 0.32 -0.1
719,473 + IAI46_03330 0.40 +0.1
719,473 + IAI46_03330 0.40 +0.0
719,498 - IAI46_03330 0.42 -0.2
719,498 - IAI46_03330 0.42 -0.2
719,602 + IAI46_03330 0.51 -0.5
719,708 - IAI46_03330 0.60 +0.9
719,708 - IAI46_03330 0.60 +0.7
719,708 - IAI46_03330 0.60 -0.4
719,708 - IAI46_03330 0.60 -0.9
719,714 + IAI46_03330 0.60 +0.5
719,714 + IAI46_03330 0.60 -2.1
719,721 + IAI46_03330 0.61 +0.5
719,722 - IAI46_03330 0.61 +0.9
719,735 + IAI46_03330 0.62 +0.3
719,735 + IAI46_03330 0.62 +0.6
719,736 - IAI46_03330 0.62 +0.8
719,736 - IAI46_03330 0.62 +0.2
719,736 - IAI46_03330 0.62 -1.0
719,737 + IAI46_03330 0.62 +0.6
719,738 - IAI46_03330 0.62 -0.3

Or see this region's nucleotide sequence