Strain Fitness in Serratia liquefaciens MT49 around IAI46_02835

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02825 and IAI46_02830 are separated by 263 nucleotidesIAI46_02830 and IAI46_02835 are separated by 87 nucleotidesIAI46_02835 and IAI46_02840 are separated by 44 nucleotidesIAI46_02840 and IAI46_02845 are separated by 34 nucleotidesIAI46_02845 and IAI46_02850 are separated by 72 nucleotides IAI46_02825: IAI46_02825 - GGDEF domain-containing protein, at 607,125 to 608,198 _02825 IAI46_02830: IAI46_02830 - DUF1435 domain-containing protein, at 608,462 to 608,746 _02830 IAI46_02835: IAI46_02835 - tRNA-Leu, at 608,834 to 608,920 _02835 IAI46_02840: IAI46_02840 - tRNA-Leu, at 608,965 to 609,051 _02840 IAI46_02845: IAI46_02845 - tRNA-Leu, at 609,086 to 609,172 _02845 IAI46_02850: IAI46_02850 - LysR family transcriptional regulator, at 609,245 to 610,189 _02850 Position (kb) 608 609Strain fitness (log2 ratio) -2 -1 0 1at 607.866 kb on - strand, within IAI46_02825at 607.874 kb on + strand, within IAI46_02825at 607.874 kb on + strand, within IAI46_02825at 607.886 kb on + strand, within IAI46_02825at 607.887 kb on - strand, within IAI46_02825at 607.890 kb on + strand, within IAI46_02825at 607.894 kb on - strand, within IAI46_02825at 607.936 kb on + strand, within IAI46_02825at 607.936 kb on + strand, within IAI46_02825at 607.940 kb on + strand, within IAI46_02825at 607.941 kb on - strand, within IAI46_02825at 607.997 kb on - strand, within IAI46_02825at 607.997 kb on - strand, within IAI46_02825at 607.997 kb on - strand, within IAI46_02825at 608.019 kb on - strand, within IAI46_02825at 608.019 kb on - strand, within IAI46_02825at 608.022 kb on + strand, within IAI46_02825at 608.051 kb on + strand, within IAI46_02825at 608.051 kb on + strand, within IAI46_02825at 608.051 kb on + strand, within IAI46_02825at 608.056 kb on - strand, within IAI46_02825at 608.056 kb on - strand, within IAI46_02825at 608.056 kb on - strand, within IAI46_02825at 608.058 kb on + strand, within IAI46_02825at 608.058 kb on + strand, within IAI46_02825at 608.065 kb on - strand, within IAI46_02825at 608.069 kb on + strand, within IAI46_02825at 608.105 kb on + strandat 608.106 kb on - strandat 608.109 kb on + strandat 608.131 kb on - strandat 608.151 kb on + strandat 608.183 kb on - strandat 608.198 kb on + strandat 608.220 kb on - strandat 608.284 kb on + strandat 608.284 kb on + strandat 608.284 kb on + strandat 608.285 kb on - strandat 608.285 kb on - strandat 608.346 kb on - strandat 608.362 kb on + strandat 608.362 kb on + strandat 608.362 kb on + strandat 608.362 kb on + strandat 608.363 kb on - strandat 608.363 kb on - strandat 608.363 kb on - strandat 608.363 kb on - strandat 608.562 kb on + strand, within IAI46_02830at 608.562 kb on + strand, within IAI46_02830at 608.593 kb on + strand, within IAI46_02830at 608.593 kb on + strand, within IAI46_02830at 608.672 kb on + strand, within IAI46_02830at 608.693 kb on - strand, within IAI46_02830at 608.745 kb on - strandat 608.797 kb on - strandat 608.797 kb on - strandat 608.797 kb on - strandat 608.797 kb on - strandat 608.870 kb on - strand, within IAI46_02835at 608.878 kb on + strand, within IAI46_02835at 608.953 kb on - strandat 608.953 kb on - strandat 608.953 kb on - strandat 609.001 kb on - strand, within IAI46_02840at 609.010 kb on - strand, within IAI46_02840at 609.010 kb on - strand, within IAI46_02840at 609.068 kb on - strandat 609.068 kb on - strandat 609.070 kb on - strandat 609.070 kb on - strandat 609.083 kb on - strandat 609.083 kb on - strandat 609.181 kb on + strandat 609.182 kb on - strandat 609.182 kb on - strandat 609.182 kb on - strandat 609.182 kb on - strandat 609.195 kb on - strandat 609.201 kb on - strandat 609.235 kb on - strandat 609.243 kb on - strandat 609.246 kb on + strandat 609.247 kb on - strandat 609.247 kb on - strandat 609.247 kb on - strandat 609.301 kb on - strandat 609.301 kb on - strandat 609.372 kb on + strand, within IAI46_02850at 609.372 kb on + strand, within IAI46_02850at 609.373 kb on - strand, within IAI46_02850at 609.373 kb on - strand, within IAI46_02850at 609.373 kb on - strand, within IAI46_02850at 609.373 kb on - strand, within IAI46_02850at 609.381 kb on + strand, within IAI46_02850at 609.459 kb on + strand, within IAI46_02850at 609.507 kb on + strand, within IAI46_02850at 609.508 kb on - strand, within IAI46_02850at 609.615 kb on + strand, within IAI46_02850at 609.616 kb on - strand, within IAI46_02850at 609.620 kb on + strand, within IAI46_02850at 609.678 kb on + strand, within IAI46_02850at 609.678 kb on + strand, within IAI46_02850at 609.678 kb on + strand, within IAI46_02850at 609.678 kb on + strand, within IAI46_02850at 609.679 kb on - strand, within IAI46_02850at 609.773 kb on + strand, within IAI46_02850at 609.773 kb on + strand, within IAI46_02850at 609.789 kb on - strand, within IAI46_02850at 609.899 kb on - strand, within IAI46_02850

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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607,866 - IAI46_02825 0.69 -0.3
607,874 + IAI46_02825 0.70 -0.1
607,874 + IAI46_02825 0.70 +0.3
607,886 + IAI46_02825 0.71 +0.1
607,887 - IAI46_02825 0.71 -0.9
607,890 + IAI46_02825 0.71 +0.3
607,894 - IAI46_02825 0.72 -0.5
607,936 + IAI46_02825 0.76 +0.5
607,936 + IAI46_02825 0.76 +0.8
607,940 + IAI46_02825 0.76 +1.1
607,941 - IAI46_02825 0.76 -0.0
607,997 - IAI46_02825 0.81 +1.6
607,997 - IAI46_02825 0.81 -0.1
607,997 - IAI46_02825 0.81 +0.3
608,019 - IAI46_02825 0.83 -1.1
608,019 - IAI46_02825 0.83 -1.2
608,022 + IAI46_02825 0.84 +1.0
608,051 + IAI46_02825 0.86 -0.1
608,051 + IAI46_02825 0.86 +0.8
608,051 + IAI46_02825 0.86 -0.1
608,056 - IAI46_02825 0.87 -0.2
608,056 - IAI46_02825 0.87 -0.2
608,056 - IAI46_02825 0.87 +0.1
608,058 + IAI46_02825 0.87 -0.5
608,058 + IAI46_02825 0.87 -0.2
608,065 - IAI46_02825 0.88 +0.1
608,069 + IAI46_02825 0.88 -0.4
608,105 + +0.1
608,106 - -0.4
608,109 + -0.7
608,131 - +0.3
608,151 + +0.2
608,183 - +1.2
608,198 + +0.3
608,220 - +0.1
608,284 + +0.1
608,284 + +0.8
608,284 + +1.0
608,285 - -0.4
608,285 - -0.1
608,346 - +0.2
608,362 + -0.3
608,362 + +0.0
608,362 + -0.2
608,362 + +0.5
608,363 - +0.1
608,363 - +0.2
608,363 - +0.2
608,363 - +0.7
608,562 + IAI46_02830 0.35 -2.0
608,562 + IAI46_02830 0.35 -0.6
608,593 + IAI46_02830 0.46 -0.3
608,593 + IAI46_02830 0.46 +0.4
608,672 + IAI46_02830 0.74 +0.4
608,693 - IAI46_02830 0.81 -0.3
608,745 - -0.3
608,797 - -0.7
608,797 - -0.1
608,797 - +0.2
608,797 - -1.6
608,870 - IAI46_02835 0.41 +0.1
608,878 + IAI46_02835 0.51 +1.3
608,953 - -0.6
608,953 - +0.9
608,953 - +0.1
609,001 - IAI46_02840 0.41 +0.0
609,010 - IAI46_02840 0.52 +0.3
609,010 - IAI46_02840 0.52 +0.5
609,068 - +0.7
609,068 - +0.0
609,070 - -0.1
609,070 - -1.1
609,083 - +0.2
609,083 - -0.2
609,181 + -0.7
609,182 - -0.4
609,182 - +0.0
609,182 - -0.0
609,182 - +0.5
609,195 - -1.7
609,201 - +0.5
609,235 - +1.6
609,243 - -1.7
609,246 + -0.7
609,247 - -0.9
609,247 - -0.2
609,247 - -1.0
609,301 - +0.1
609,301 - -1.5
609,372 + IAI46_02850 0.13 +0.9
609,372 + IAI46_02850 0.13 +0.2
609,373 - IAI46_02850 0.14 -0.1
609,373 - IAI46_02850 0.14 +0.2
609,373 - IAI46_02850 0.14 -0.1
609,373 - IAI46_02850 0.14 -2.0
609,381 + IAI46_02850 0.14 -0.1
609,459 + IAI46_02850 0.23 +0.8
609,507 + IAI46_02850 0.28 +0.0
609,508 - IAI46_02850 0.28 -0.0
609,615 + IAI46_02850 0.39 -1.2
609,616 - IAI46_02850 0.39 -0.1
609,620 + IAI46_02850 0.40 +0.7
609,678 + IAI46_02850 0.46 -0.1
609,678 + IAI46_02850 0.46 +1.0
609,678 + IAI46_02850 0.46 -2.0
609,678 + IAI46_02850 0.46 -0.4
609,679 - IAI46_02850 0.46 +0.3
609,773 + IAI46_02850 0.56 +0.3
609,773 + IAI46_02850 0.56 -0.0
609,789 - IAI46_02850 0.58 +0.5
609,899 - IAI46_02850 0.69 -0.1

Or see this region's nucleotide sequence