Strain Fitness in Serratia liquefaciens MT49 around IAI46_02715

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02705 and IAI46_02710 are separated by 10 nucleotidesIAI46_02710 and IAI46_02715 are separated by 4 nucleotidesIAI46_02715 and IAI46_02720 are separated by 96 nucleotidesIAI46_02720 and IAI46_02725 are separated by 359 nucleotides IAI46_02705: IAI46_02705 - SDR family oxidoreductase, at 584,271 to 585,053 _02705 IAI46_02710: IAI46_02710 - molybdenum cofactor biosynthesis F family protein, at 585,064 to 585,861 _02710 IAI46_02715: IAI46_02715 - SDR family oxidoreductase, at 585,866 to 586,657 _02715 IAI46_02720: IAI46_02720 - homoprotocatechuate degradation operon regulator HpaR, at 586,754 to 587,206 _02720 IAI46_02725: IAI46_02725 - fumarylacetoacetate hydrolase family protein, at 587,566 to 588,198 _02725 Position (kb) 585 586 587Strain fitness (log2 ratio) -2 -1 0 1at 584.877 kb on + strand, within IAI46_02705at 584.877 kb on + strand, within IAI46_02705at 584.878 kb on - strand, within IAI46_02705at 584.887 kb on + strand, within IAI46_02705at 584.888 kb on - strand, within IAI46_02705at 585.025 kb on + strandat 585.041 kb on + strandat 585.041 kb on + strandat 585.041 kb on + strandat 585.052 kb on - strandat 585.070 kb on - strandat 585.080 kb on + strandat 585.084 kb on + strandat 585.085 kb on - strandat 585.129 kb on + strandat 585.130 kb on - strandat 585.130 kb on - strandat 585.159 kb on + strand, within IAI46_02710at 585.173 kb on + strand, within IAI46_02710at 585.173 kb on + strand, within IAI46_02710at 585.241 kb on + strand, within IAI46_02710at 585.242 kb on - strand, within IAI46_02710at 585.257 kb on - strand, within IAI46_02710at 585.373 kb on + strand, within IAI46_02710at 585.373 kb on + strand, within IAI46_02710at 585.374 kb on - strand, within IAI46_02710at 585.534 kb on + strand, within IAI46_02710at 585.534 kb on + strand, within IAI46_02710at 585.535 kb on - strand, within IAI46_02710at 585.541 kb on + strand, within IAI46_02710at 585.541 kb on + strand, within IAI46_02710at 585.541 kb on + strand, within IAI46_02710at 585.541 kb on + strand, within IAI46_02710at 585.541 kb on + strand, within IAI46_02710at 585.541 kb on + strand, within IAI46_02710at 585.541 kb on + strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.542 kb on - strand, within IAI46_02710at 585.543 kb on + strand, within IAI46_02710at 585.543 kb on + strand, within IAI46_02710at 585.543 kb on + strand, within IAI46_02710at 585.543 kb on + strand, within IAI46_02710at 585.544 kb on - strand, within IAI46_02710at 585.544 kb on - strand, within IAI46_02710at 585.547 kb on + strand, within IAI46_02710at 585.547 kb on + strand, within IAI46_02710at 585.547 kb on + strand, within IAI46_02710at 585.548 kb on - strand, within IAI46_02710at 585.548 kb on - strand, within IAI46_02710at 585.548 kb on - strand, within IAI46_02710at 585.548 kb on - strand, within IAI46_02710at 585.548 kb on - strand, within IAI46_02710at 585.565 kb on + strand, within IAI46_02710at 585.578 kb on - strand, within IAI46_02710at 585.578 kb on - strand, within IAI46_02710at 585.596 kb on - strand, within IAI46_02710at 585.655 kb on + strand, within IAI46_02710at 585.655 kb on + strand, within IAI46_02710at 585.679 kb on + strand, within IAI46_02710at 585.679 kb on + strand, within IAI46_02710at 585.680 kb on - strand, within IAI46_02710at 585.680 kb on - strand, within IAI46_02710at 585.680 kb on - strand, within IAI46_02710at 585.680 kb on - strand, within IAI46_02710at 585.859 kb on + strandat 585.859 kb on + strandat 585.860 kb on - strandat 585.878 kb on + strandat 585.878 kb on + strandat 585.878 kb on + strandat 585.878 kb on + strandat 586.160 kb on + strand, within IAI46_02715at 586.160 kb on + strand, within IAI46_02715at 586.161 kb on - strand, within IAI46_02715at 586.200 kb on + strand, within IAI46_02715at 586.350 kb on - strand, within IAI46_02715at 586.371 kb on + strand, within IAI46_02715at 586.372 kb on - strand, within IAI46_02715at 586.382 kb on - strand, within IAI46_02715at 586.586 kb on + strandat 586.587 kb on - strandat 586.587 kb on - strandat 586.587 kb on - strandat 586.587 kb on - strandat 586.587 kb on - strandat 586.588 kb on + strandat 586.588 kb on + strandat 586.588 kb on + strandat 586.588 kb on + strandat 586.589 kb on - strandat 586.678 kb on + strandat 586.678 kb on + strandat 586.682 kb on - strandat 586.729 kb on - strandat 586.742 kb on + strandat 586.742 kb on + strandat 586.824 kb on - strand, within IAI46_02720at 586.878 kb on + strand, within IAI46_02720at 586.878 kb on + strand, within IAI46_02720at 586.878 kb on + strand, within IAI46_02720at 586.889 kb on + strand, within IAI46_02720at 586.890 kb on - strand, within IAI46_02720at 586.890 kb on - strand, within IAI46_02720at 586.911 kb on + strand, within IAI46_02720at 586.911 kb on + strand, within IAI46_02720at 586.911 kb on + strand, within IAI46_02720at 586.912 kb on - strand, within IAI46_02720at 586.912 kb on - strand, within IAI46_02720at 586.912 kb on - strand, within IAI46_02720at 586.912 kb on - strand, within IAI46_02720at 586.944 kb on + strand, within IAI46_02720at 586.945 kb on - strand, within IAI46_02720at 586.945 kb on - strand, within IAI46_02720at 586.945 kb on - strand, within IAI46_02720at 586.945 kb on - strand, within IAI46_02720at 586.945 kb on - strand, within IAI46_02720at 586.990 kb on + strand, within IAI46_02720at 586.991 kb on - strand, within IAI46_02720at 586.991 kb on - strand, within IAI46_02720at 587.206 kb on + strandat 587.206 kb on + strandat 587.206 kb on + strandat 587.207 kb on - strandat 587.207 kb on - strandat 587.207 kb on - strandat 587.207 kb on - strandat 587.222 kb on + strandat 587.223 kb on - strandat 587.223 kb on - strandat 587.224 kb on + strandat 587.225 kb on - strandat 587.225 kb on - strandat 587.237 kb on + strandat 587.237 kb on + strandat 587.250 kb on - strandat 587.250 kb on - strandat 587.289 kb on + strandat 587.412 kb on - strandat 587.412 kb on - strandat 587.499 kb on - strandat 587.500 kb on + strandat 587.501 kb on - strandat 587.613 kb on - strandat 587.649 kb on + strand, within IAI46_02725at 587.649 kb on + strand, within IAI46_02725at 587.650 kb on - strand, within IAI46_02725

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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584,877 + IAI46_02705 0.77 +0.2
584,877 + IAI46_02705 0.77 +0.2
584,878 - IAI46_02705 0.78 -0.1
584,887 + IAI46_02705 0.79 +1.5
584,888 - IAI46_02705 0.79 +1.1
585,025 + -1.1
585,041 + +0.2
585,041 + +0.1
585,041 + +0.0
585,052 - +0.2
585,070 - -1.2
585,080 + +0.0
585,084 + -0.2
585,085 - +0.2
585,129 + -0.4
585,130 - -1.1
585,130 - +0.4
585,159 + IAI46_02710 0.12 +0.8
585,173 + IAI46_02710 0.14 +0.6
585,173 + IAI46_02710 0.14 -1.4
585,241 + IAI46_02710 0.22 +0.3
585,242 - IAI46_02710 0.22 -0.7
585,257 - IAI46_02710 0.24 -0.7
585,373 + IAI46_02710 0.39 -0.3
585,373 + IAI46_02710 0.39 -1.6
585,374 - IAI46_02710 0.39 +0.9
585,534 + IAI46_02710 0.59 -0.6
585,534 + IAI46_02710 0.59 +0.7
585,535 - IAI46_02710 0.59 -0.0
585,541 + IAI46_02710 0.60 +0.3
585,541 + IAI46_02710 0.60 +0.6
585,541 + IAI46_02710 0.60 +0.1
585,541 + IAI46_02710 0.60 +0.6
585,541 + IAI46_02710 0.60 +0.2
585,541 + IAI46_02710 0.60 -1.6
585,541 + IAI46_02710 0.60 +0.7
585,542 - IAI46_02710 0.60 +0.2
585,542 - IAI46_02710 0.60 -0.2
585,542 - IAI46_02710 0.60 -1.5
585,542 - IAI46_02710 0.60 -0.6
585,542 - IAI46_02710 0.60 +0.5
585,542 - IAI46_02710 0.60 +0.6
585,542 - IAI46_02710 0.60 +0.1
585,542 - IAI46_02710 0.60 -0.9
585,542 - IAI46_02710 0.60 +0.1
585,542 - IAI46_02710 0.60 -0.5
585,542 - IAI46_02710 0.60 +0.4
585,542 - IAI46_02710 0.60 -1.3
585,543 + IAI46_02710 0.60 -0.5
585,543 + IAI46_02710 0.60 -0.3
585,543 + IAI46_02710 0.60 -0.0
585,543 + IAI46_02710 0.60 -0.1
585,544 - IAI46_02710 0.60 -0.3
585,544 - IAI46_02710 0.60 +1.0
585,547 + IAI46_02710 0.61 -0.2
585,547 + IAI46_02710 0.61 +0.5
585,547 + IAI46_02710 0.61 -0.5
585,548 - IAI46_02710 0.61 -0.2
585,548 - IAI46_02710 0.61 -0.5
585,548 - IAI46_02710 0.61 -0.6
585,548 - IAI46_02710 0.61 +0.4
585,548 - IAI46_02710 0.61 +0.3
585,565 + IAI46_02710 0.63 +0.0
585,578 - IAI46_02710 0.64 -0.7
585,578 - IAI46_02710 0.64 -0.2
585,596 - IAI46_02710 0.67 +1.2
585,655 + IAI46_02710 0.74 +0.3
585,655 + IAI46_02710 0.74 +0.6
585,679 + IAI46_02710 0.77 -0.6
585,679 + IAI46_02710 0.77 +0.6
585,680 - IAI46_02710 0.77 -0.1
585,680 - IAI46_02710 0.77 -1.5
585,680 - IAI46_02710 0.77 +0.3
585,680 - IAI46_02710 0.77 +0.3
585,859 + -0.3
585,859 + -0.7
585,860 - -0.5
585,878 + +1.2
585,878 + -0.7
585,878 + +0.4
585,878 + -0.2
586,160 + IAI46_02715 0.37 -1.4
586,160 + IAI46_02715 0.37 +0.6
586,161 - IAI46_02715 0.37 +0.8
586,200 + IAI46_02715 0.42 +0.1
586,350 - IAI46_02715 0.61 +0.3
586,371 + IAI46_02715 0.64 -0.4
586,372 - IAI46_02715 0.64 +1.1
586,382 - IAI46_02715 0.65 -1.3
586,586 + -1.0
586,587 - -0.0
586,587 - +0.5
586,587 - -0.0
586,587 - +1.4
586,587 - +1.2
586,588 + -0.3
586,588 + -0.1
586,588 + +0.1
586,588 + -0.6
586,589 - +0.9
586,678 + +0.7
586,678 + -0.7
586,682 - +0.2
586,729 - +0.7
586,742 + +0.5
586,742 + +0.0
586,824 - IAI46_02720 0.15 -0.2
586,878 + IAI46_02720 0.27 +0.1
586,878 + IAI46_02720 0.27 +0.4
586,878 + IAI46_02720 0.27 -0.4
586,889 + IAI46_02720 0.30 -0.1
586,890 - IAI46_02720 0.30 -0.6
586,890 - IAI46_02720 0.30 +0.9
586,911 + IAI46_02720 0.35 +0.1
586,911 + IAI46_02720 0.35 -1.0
586,911 + IAI46_02720 0.35 -2.7
586,912 - IAI46_02720 0.35 +0.7
586,912 - IAI46_02720 0.35 +0.1
586,912 - IAI46_02720 0.35 +1.1
586,912 - IAI46_02720 0.35 +0.9
586,944 + IAI46_02720 0.42 +0.3
586,945 - IAI46_02720 0.42 -0.0
586,945 - IAI46_02720 0.42 +0.3
586,945 - IAI46_02720 0.42 -0.5
586,945 - IAI46_02720 0.42 -0.9
586,945 - IAI46_02720 0.42 -1.4
586,990 + IAI46_02720 0.52 -0.2
586,991 - IAI46_02720 0.52 +0.4
586,991 - IAI46_02720 0.52 -0.6
587,206 + +0.8
587,206 + +0.3
587,206 + -0.0
587,207 - -0.4
587,207 - +0.4
587,207 - +1.1
587,207 - +1.6
587,222 + -0.1
587,223 - +0.3
587,223 - +0.8
587,224 + -0.4
587,225 - -0.4
587,225 - +0.4
587,237 + +0.7
587,237 + -0.4
587,250 - -0.4
587,250 - +0.4
587,289 + -0.2
587,412 - -0.2
587,412 - -1.4
587,499 - +0.3
587,500 + -0.5
587,501 - +0.3
587,613 - -0.7
587,649 + IAI46_02725 0.13 +0.6
587,649 + IAI46_02725 0.13 -1.7
587,650 - IAI46_02725 0.13 -0.5

Or see this region's nucleotide sequence