Strain Fitness in Serratia liquefaciens MT49 around IAI46_02200

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02190 and IAI46_02195 are separated by 177 nucleotidesIAI46_02195 and IAI46_02200 overlap by 4 nucleotidesIAI46_02200 and IAI46_02205 are separated by 68 nucleotidesIAI46_02205 and IAI46_02210 overlap by 4 nucleotides IAI46_02190: IAI46_02190 - S-type pyocin domain-containing protein, at 461,491 to 462,057 _02190 IAI46_02195: IAI46_02195 - colicin-D, at 462,235 to 462,501 _02195 IAI46_02200: IAI46_02200 - S-type pyocin domain-containing protein, at 462,498 to 463,001 _02200 IAI46_02205: IAI46_02205 - hypothetical protein, at 463,070 to 463,342 _02205 IAI46_02210: IAI46_02210 - S-type pyocin domain-containing protein, at 463,339 to 464,259 _02210 Position (kb) 462 463 464Strain fitness (log2 ratio) -1 0 1at 461.522 kb on + strandat 461.608 kb on - strand, within IAI46_02190at 461.619 kb on + strand, within IAI46_02190at 461.619 kb on + strand, within IAI46_02190at 461.619 kb on + strand, within IAI46_02190at 461.619 kb on + strand, within IAI46_02190at 461.620 kb on - strand, within IAI46_02190at 461.659 kb on - strand, within IAI46_02190at 461.988 kb on + strand, within IAI46_02190at 461.988 kb on + strand, within IAI46_02190at 461.988 kb on + strand, within IAI46_02190at 461.988 kb on + strand, within IAI46_02190at 461.989 kb on - strand, within IAI46_02190at 461.989 kb on - strand, within IAI46_02190at 461.989 kb on - strand, within IAI46_02190at 462.025 kb on + strandat 462.031 kb on + strandat 462.032 kb on - strandat 462.047 kb on - strandat 462.047 kb on - strandat 462.140 kb on - strandat 462.140 kb on - strandat 462.140 kb on - strandat 462.140 kb on - strandat 462.232 kb on - strandat 462.646 kb on + strand, within IAI46_02200at 462.917 kb on + strand, within IAI46_02200at 462.946 kb on + strand, within IAI46_02200at 462.971 kb on + strandat 463.002 kb on + strandat 463.145 kb on - strand, within IAI46_02205at 463.175 kb on + strand, within IAI46_02205at 463.331 kb on + strandat 463.345 kb on + strandat 463.392 kb on + strandat 463.393 kb on - strandat 463.395 kb on - strandat 463.395 kb on - strandat 463.397 kb on - strandat 463.397 kb on - strandat 463.397 kb on - strandat 463.413 kb on + strandat 463.424 kb on + strandat 463.433 kb on - strand, within IAI46_02210at 463.453 kb on - strand, within IAI46_02210at 463.453 kb on - strand, within IAI46_02210at 463.453 kb on - strand, within IAI46_02210at 463.459 kb on + strand, within IAI46_02210at 463.507 kb on - strand, within IAI46_02210at 463.507 kb on - strand, within IAI46_02210at 463.511 kb on + strand, within IAI46_02210at 463.609 kb on + strand, within IAI46_02210at 463.610 kb on - strand, within IAI46_02210at 463.610 kb on - strand, within IAI46_02210at 463.617 kb on + strand, within IAI46_02210at 463.617 kb on + strand, within IAI46_02210at 463.618 kb on - strand, within IAI46_02210at 463.618 kb on - strand, within IAI46_02210at 463.644 kb on + strand, within IAI46_02210at 463.654 kb on + strand, within IAI46_02210at 463.654 kb on + strand, within IAI46_02210at 463.655 kb on - strand, within IAI46_02210at 463.655 kb on - strand, within IAI46_02210at 463.683 kb on + strand, within IAI46_02210at 463.732 kb on - strand, within IAI46_02210at 463.736 kb on + strand, within IAI46_02210at 463.737 kb on - strand, within IAI46_02210at 463.737 kb on - strand, within IAI46_02210at 463.737 kb on - strand, within IAI46_02210at 463.737 kb on - strand, within IAI46_02210at 463.767 kb on + strand, within IAI46_02210at 463.768 kb on - strand, within IAI46_02210at 463.800 kb on - strand, within IAI46_02210at 463.965 kb on + strand, within IAI46_02210at 463.966 kb on - strand, within IAI46_02210at 463.966 kb on - strand, within IAI46_02210

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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461,522 + +0.4
461,608 - IAI46_02190 0.21 +0.3
461,619 + IAI46_02190 0.23 +0.6
461,619 + IAI46_02190 0.23 +0.8
461,619 + IAI46_02190 0.23 -0.4
461,619 + IAI46_02190 0.23 -1.4
461,620 - IAI46_02190 0.23 +0.5
461,659 - IAI46_02190 0.30 +0.4
461,988 + IAI46_02190 0.88 -0.1
461,988 + IAI46_02190 0.88 -0.4
461,988 + IAI46_02190 0.88 +0.5
461,988 + IAI46_02190 0.88 +0.5
461,989 - IAI46_02190 0.88 -1.2
461,989 - IAI46_02190 0.88 +1.2
461,989 - IAI46_02190 0.88 +0.6
462,025 + -0.3
462,031 + +0.4
462,032 - -0.3
462,047 - -0.1
462,047 - +0.5
462,140 - -0.2
462,140 - +1.0
462,140 - +0.3
462,140 - -1.4
462,232 - +0.1
462,646 + IAI46_02200 0.29 +0.2
462,917 + IAI46_02200 0.83 +0.5
462,946 + IAI46_02200 0.89 +0.9
462,971 + -1.0
463,002 + +0.3
463,145 - IAI46_02205 0.27 -0.0
463,175 + IAI46_02205 0.38 -0.7
463,331 + +0.7
463,345 + -1.6
463,392 + +0.7
463,393 - -1.3
463,395 - -0.2
463,395 - -1.1
463,397 - -0.5
463,397 - -0.1
463,397 - -0.2
463,413 + -0.2
463,424 + -1.0
463,433 - IAI46_02210 0.10 +1.2
463,453 - IAI46_02210 0.12 -0.3
463,453 - IAI46_02210 0.12 +1.2
463,453 - IAI46_02210 0.12 -0.1
463,459 + IAI46_02210 0.13 -0.8
463,507 - IAI46_02210 0.18 +0.9
463,507 - IAI46_02210 0.18 +1.1
463,511 + IAI46_02210 0.19 -1.2
463,609 + IAI46_02210 0.29 -0.4
463,610 - IAI46_02210 0.29 -0.0
463,610 - IAI46_02210 0.29 -0.5
463,617 + IAI46_02210 0.30 -0.1
463,617 + IAI46_02210 0.30 -0.0
463,618 - IAI46_02210 0.30 +0.4
463,618 - IAI46_02210 0.30 -0.4
463,644 + IAI46_02210 0.33 +0.2
463,654 + IAI46_02210 0.34 -0.2
463,654 + IAI46_02210 0.34 +0.5
463,655 - IAI46_02210 0.34 +0.6
463,655 - IAI46_02210 0.34 -0.2
463,683 + IAI46_02210 0.37 -0.9
463,732 - IAI46_02210 0.43 +1.2
463,736 + IAI46_02210 0.43 +0.3
463,737 - IAI46_02210 0.43 -0.4
463,737 - IAI46_02210 0.43 +0.5
463,737 - IAI46_02210 0.43 +0.4
463,737 - IAI46_02210 0.43 -0.1
463,767 + IAI46_02210 0.46 +0.9
463,768 - IAI46_02210 0.47 -0.5
463,800 - IAI46_02210 0.50 +0.4
463,965 + IAI46_02210 0.68 +0.3
463,966 - IAI46_02210 0.68 +0.6
463,966 - IAI46_02210 0.68 +0.6

Or see this region's nucleotide sequence