Strain Fitness in Serratia liquefaciens MT49 around IAI46_01680

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01670 and IAI46_01675 are separated by 87 nucleotidesIAI46_01675 and IAI46_01680 overlap by 4 nucleotidesIAI46_01680 and IAI46_01685 are separated by 122 nucleotidesIAI46_01685 and IAI46_01690 are separated by 126 nucleotides IAI46_01670: IAI46_01670 - isovaleryl-CoA dehydrogenase, at 366,791 to 368,422 _01670 IAI46_01675: IAI46_01675 - DUF350 domain-containing protein, at 368,510 to 368,908 _01675 IAI46_01680: IAI46_01680 - DUF1471 domain-containing protein, at 368,905 to 369,180 _01680 IAI46_01685: IAI46_01685 - biofilm peroxide resistance protein BsmA, at 369,303 to 369,611 _01685 IAI46_01690: IAI46_01690 - esterase, at 369,738 to 370,490 _01690 Position (kb) 368 369 370Strain fitness (log2 ratio) -2 -1 0 1 2at 368.048 kb on + strand, within IAI46_01670at 368.092 kb on + strand, within IAI46_01670at 368.093 kb on - strand, within IAI46_01670at 368.095 kb on + strand, within IAI46_01670at 368.095 kb on + strand, within IAI46_01670at 368.095 kb on + strand, within IAI46_01670at 368.095 kb on + strand, within IAI46_01670at 368.095 kb on + strand, within IAI46_01670at 368.096 kb on - strand, within IAI46_01670at 368.096 kb on - strand, within IAI46_01670at 368.193 kb on - strand, within IAI46_01670at 368.193 kb on - strand, within IAI46_01670at 368.271 kb on + strandat 368.271 kb on + strandat 368.275 kb on + strandat 368.276 kb on - strandat 368.424 kb on + strandat 368.424 kb on + strandat 368.425 kb on - strandat 368.483 kb on + strandat 368.483 kb on + strandat 368.515 kb on + strandat 368.546 kb on + strandat 368.546 kb on + strandat 368.547 kb on - strandat 368.547 kb on - strandat 368.592 kb on - strand, within IAI46_01675at 368.592 kb on - strand, within IAI46_01675at 368.593 kb on + strand, within IAI46_01675at 368.593 kb on + strand, within IAI46_01675at 368.594 kb on - strand, within IAI46_01675at 368.603 kb on - strand, within IAI46_01675at 368.681 kb on + strand, within IAI46_01675at 368.681 kb on + strand, within IAI46_01675at 368.682 kb on - strand, within IAI46_01675at 368.682 kb on - strand, within IAI46_01675at 368.682 kb on - strand, within IAI46_01675at 368.732 kb on + strand, within IAI46_01675at 368.732 kb on + strand, within IAI46_01675at 368.733 kb on - strand, within IAI46_01675at 368.739 kb on + strand, within IAI46_01675at 368.763 kb on + strand, within IAI46_01675at 368.764 kb on - strand, within IAI46_01675at 368.795 kb on + strand, within IAI46_01675at 368.795 kb on + strand, within IAI46_01675at 368.796 kb on - strand, within IAI46_01675at 368.796 kb on - strand, within IAI46_01675at 368.796 kb on - strand, within IAI46_01675at 368.796 kb on - strand, within IAI46_01675at 368.798 kb on - strand, within IAI46_01675at 368.903 kb on + strandat 368.903 kb on + strandat 368.903 kb on + strandat 368.903 kb on + strandat 368.903 kb on + strandat 368.904 kb on - strandat 368.904 kb on - strandat 368.906 kb on + strandat 368.906 kb on + strandat 368.906 kb on + strandat 368.907 kb on - strandat 368.907 kb on - strandat 368.912 kb on + strandat 368.912 kb on + strandat 368.913 kb on - strandat 368.917 kb on + strandat 368.918 kb on - strandat 368.918 kb on - strandat 368.918 kb on - strandat 368.918 kb on - strandat 368.975 kb on + strand, within IAI46_01680at 368.978 kb on + strand, within IAI46_01680at 368.979 kb on - strand, within IAI46_01680at 368.979 kb on - strand, within IAI46_01680at 368.979 kb on - strand, within IAI46_01680at 369.023 kb on - strand, within IAI46_01680at 369.023 kb on - strand, within IAI46_01680at 369.141 kb on + strand, within IAI46_01680at 369.250 kb on - strandat 369.279 kb on + strandat 369.366 kb on + strand, within IAI46_01685at 369.367 kb on - strand, within IAI46_01685at 369.373 kb on + strand, within IAI46_01685at 369.373 kb on + strand, within IAI46_01685at 369.373 kb on + strand, within IAI46_01685at 369.374 kb on - strand, within IAI46_01685at 369.374 kb on - strand, within IAI46_01685at 369.377 kb on - strand, within IAI46_01685at 369.611 kb on + strandat 369.611 kb on + strandat 369.612 kb on - strandat 369.615 kb on + strandat 369.615 kb on + strandat 369.615 kb on + strandat 369.615 kb on + strandat 369.616 kb on - strandat 369.616 kb on - strandat 369.632 kb on + strandat 369.648 kb on + strandat 369.649 kb on - strandat 369.649 kb on - strandat 369.657 kb on - strandat 369.658 kb on + strandat 369.678 kb on + strandat 369.678 kb on + strandat 369.678 kb on + strandat 369.679 kb on - strandat 369.679 kb on - strandat 369.679 kb on - strandat 369.679 kb on - strandat 369.705 kb on + strandat 369.706 kb on - strandat 369.770 kb on + strandat 369.771 kb on - strandat 369.771 kb on - strandat 369.771 kb on - strandat 369.771 kb on - strandat 369.826 kb on + strand, within IAI46_01690at 369.827 kb on - strand, within IAI46_01690at 369.843 kb on + strand, within IAI46_01690at 369.843 kb on + strand, within IAI46_01690at 369.844 kb on - strand, within IAI46_01690at 369.844 kb on - strand, within IAI46_01690at 369.845 kb on + strand, within IAI46_01690at 369.845 kb on + strand, within IAI46_01690at 369.845 kb on + strand, within IAI46_01690at 369.845 kb on + strand, within IAI46_01690at 369.845 kb on + strand, within IAI46_01690at 369.845 kb on + strand, within IAI46_01690at 369.846 kb on - strand, within IAI46_01690at 369.846 kb on - strand, within IAI46_01690at 369.846 kb on - strand, within IAI46_01690at 369.846 kb on - strand, within IAI46_01690at 369.846 kb on - strand, within IAI46_01690at 369.864 kb on + strand, within IAI46_01690at 369.865 kb on - strand, within IAI46_01690at 369.880 kb on - strand, within IAI46_01690at 369.999 kb on - strand, within IAI46_01690at 370.000 kb on + strand, within IAI46_01690at 370.010 kb on - strand, within IAI46_01690at 370.164 kb on + strand, within IAI46_01690at 370.164 kb on + strand, within IAI46_01690at 370.165 kb on - strand, within IAI46_01690at 370.165 kb on - strand, within IAI46_01690

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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368,048 + IAI46_01670 0.77 -0.1
368,092 + IAI46_01670 0.80 +0.1
368,093 - IAI46_01670 0.80 -0.2
368,095 + IAI46_01670 0.80 +0.7
368,095 + IAI46_01670 0.80 -0.6
368,095 + IAI46_01670 0.80 +0.1
368,095 + IAI46_01670 0.80 -0.1
368,095 + IAI46_01670 0.80 +0.1
368,096 - IAI46_01670 0.80 -0.0
368,096 - IAI46_01670 0.80 -1.4
368,193 - IAI46_01670 0.86 -1.1
368,193 - IAI46_01670 0.86 -0.6
368,271 + -0.3
368,271 + +0.4
368,275 + +0.8
368,276 - +0.5
368,424 + +0.3
368,424 + -0.3
368,425 - -0.0
368,483 + +0.1
368,483 + +0.2
368,515 + -0.1
368,546 + +0.6
368,546 + +0.5
368,547 - -0.1
368,547 - -1.0
368,592 - IAI46_01675 0.21 +0.1
368,592 - IAI46_01675 0.21 -0.3
368,593 + IAI46_01675 0.21 +0.6
368,593 + IAI46_01675 0.21 -0.7
368,594 - IAI46_01675 0.21 -0.8
368,603 - IAI46_01675 0.23 +0.3
368,681 + IAI46_01675 0.43 -2.5
368,681 + IAI46_01675 0.43 -0.5
368,682 - IAI46_01675 0.43 -0.1
368,682 - IAI46_01675 0.43 +0.8
368,682 - IAI46_01675 0.43 +0.3
368,732 + IAI46_01675 0.56 +0.7
368,732 + IAI46_01675 0.56 +0.8
368,733 - IAI46_01675 0.56 +0.6
368,739 + IAI46_01675 0.57 +0.2
368,763 + IAI46_01675 0.63 +0.5
368,764 - IAI46_01675 0.64 +0.9
368,795 + IAI46_01675 0.71 +0.6
368,795 + IAI46_01675 0.71 -0.3
368,796 - IAI46_01675 0.72 -0.4
368,796 - IAI46_01675 0.72 +0.2
368,796 - IAI46_01675 0.72 +0.4
368,796 - IAI46_01675 0.72 +0.3
368,798 - IAI46_01675 0.72 +0.5
368,903 + +1.0
368,903 + -0.5
368,903 + -0.6
368,903 + -0.1
368,903 + +0.8
368,904 - +0.8
368,904 - -0.2
368,906 + +0.1
368,906 + +0.9
368,906 + +0.2
368,907 - +1.0
368,907 - -0.3
368,912 + +0.0
368,912 + -0.3
368,913 - +0.7
368,917 + +0.0
368,918 - -0.3
368,918 - +0.4
368,918 - -0.7
368,918 - +0.4
368,975 + IAI46_01680 0.25 +0.6
368,978 + IAI46_01680 0.26 -1.4
368,979 - IAI46_01680 0.27 +0.2
368,979 - IAI46_01680 0.27 +1.3
368,979 - IAI46_01680 0.27 +0.5
369,023 - IAI46_01680 0.43 +1.2
369,023 - IAI46_01680 0.43 -0.2
369,141 + IAI46_01680 0.86 +1.2
369,250 - +0.0
369,279 + -1.0
369,366 + IAI46_01685 0.20 -1.0
369,367 - IAI46_01685 0.21 +0.2
369,373 + IAI46_01685 0.23 +0.2
369,373 + IAI46_01685 0.23 +0.3
369,373 + IAI46_01685 0.23 -1.6
369,374 - IAI46_01685 0.23 +0.2
369,374 - IAI46_01685 0.23 -0.1
369,377 - IAI46_01685 0.24 +0.2
369,611 + +2.0
369,611 + +0.7
369,612 - -0.3
369,615 + -0.9
369,615 + -0.4
369,615 + -0.2
369,615 + -0.2
369,616 - +0.4
369,616 - +0.1
369,632 + +0.9
369,648 + +0.3
369,649 - -0.4
369,649 - -0.8
369,657 - +0.3
369,658 + -1.1
369,678 + +0.5
369,678 + +0.4
369,678 + +0.6
369,679 - -1.7
369,679 - -1.7
369,679 - -2.2
369,679 - -0.5
369,705 + -0.8
369,706 - -0.4
369,770 + +0.3
369,771 - +0.2
369,771 - +0.6
369,771 - -1.0
369,771 - -0.5
369,826 + IAI46_01690 0.12 -1.8
369,827 - IAI46_01690 0.12 -0.8
369,843 + IAI46_01690 0.14 +0.4
369,843 + IAI46_01690 0.14 +0.3
369,844 - IAI46_01690 0.14 -0.8
369,844 - IAI46_01690 0.14 -0.4
369,845 + IAI46_01690 0.14 +0.6
369,845 + IAI46_01690 0.14 -0.6
369,845 + IAI46_01690 0.14 -0.2
369,845 + IAI46_01690 0.14 -0.3
369,845 + IAI46_01690 0.14 -0.1
369,845 + IAI46_01690 0.14 +1.2
369,846 - IAI46_01690 0.14 -0.3
369,846 - IAI46_01690 0.14 -0.5
369,846 - IAI46_01690 0.14 -0.1
369,846 - IAI46_01690 0.14 -0.1
369,846 - IAI46_01690 0.14 +0.6
369,864 + IAI46_01690 0.17 +0.7
369,865 - IAI46_01690 0.17 -0.1
369,880 - IAI46_01690 0.19 -0.4
369,999 - IAI46_01690 0.35 +0.0
370,000 + IAI46_01690 0.35 -0.1
370,010 - IAI46_01690 0.36 +1.2
370,164 + IAI46_01690 0.57 +0.4
370,164 + IAI46_01690 0.57 -0.4
370,165 - IAI46_01690 0.57 +0.5
370,165 - IAI46_01690 0.57 +0.3

Or see this region's nucleotide sequence