Strain Fitness in Serratia liquefaciens MT49 around IAI46_01080

Experiment: Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01075 and IAI46_01080 are separated by 80 nucleotidesIAI46_01080 and IAI46_01085 are separated by 3 nucleotidesIAI46_01085 and IAI46_01090 are separated by 3 nucleotides IAI46_01075: IAI46_01075 - ubiquinone biosynthesis regulatory protein kinase UbiB, at 239,392 to 241,023 _01075 IAI46_01080: IAI46_01080 - Sec-independent protein translocase subunit TatA, at 241,104 to 241,367 _01080 IAI46_01085: IAI46_01085 - Sec-independent protein translocase subunit TatB, at 241,371 to 241,937 _01085 IAI46_01090: IAI46_01090 - Sec-independent protein translocase subunit TatC, at 241,941 to 242,711 _01090 Position (kb) 241 242Strain fitness (log2 ratio) -2 -1 0 1at 241.054 kb on + strandat 241.057 kb on - strandat 241.096 kb on + strandat 241.096 kb on + strandat 241.096 kb on + strandat 241.096 kb on + strandat 241.097 kb on - strandat 241.097 kb on - strandat 241.115 kb on + strandat 241.118 kb on + strandat 241.118 kb on + strandat 241.118 kb on + strandat 241.119 kb on - strandat 241.119 kb on - strandat 241.122 kb on - strandat 241.122 kb on - strandat 241.310 kb on + strand, within IAI46_01080at 241.365 kb on + strandat 241.366 kb on - strandat 241.389 kb on - strandat 241.426 kb on + strandat 241.426 kb on + strandat 241.456 kb on + strand, within IAI46_01085at 241.456 kb on + strand, within IAI46_01085at 241.568 kb on - strand, within IAI46_01085at 241.656 kb on + strand, within IAI46_01085at 241.768 kb on + strand, within IAI46_01085at 241.768 kb on + strand, within IAI46_01085at 241.769 kb on - strand, within IAI46_01085at 241.804 kb on + strand, within IAI46_01085at 241.922 kb on + strandat 241.922 kb on + strandat 241.935 kb on + strandat 241.935 kb on + strandat 241.955 kb on + strandat 241.956 kb on - strandat 241.981 kb on + strandat 241.981 kb on + strandat 241.981 kb on + strandat 241.981 kb on + strandat 241.982 kb on - strandat 241.983 kb on + strandat 242.003 kb on - strandat 242.009 kb on + strandat 242.012 kb on + strandat 242.013 kb on - strandat 242.013 kb on - strandat 242.020 kb on + strand, within IAI46_01090at 242.020 kb on + strand, within IAI46_01090at 242.060 kb on + strand, within IAI46_01090at 242.061 kb on - strand, within IAI46_01090at 242.061 kb on - strand, within IAI46_01090at 242.064 kb on + strand, within IAI46_01090at 242.148 kb on - strand, within IAI46_01090at 242.206 kb on - strand, within IAI46_01090at 242.238 kb on + strand, within IAI46_01090at 242.238 kb on + strand, within IAI46_01090at 242.239 kb on - strand, within IAI46_01090at 242.239 kb on - strand, within IAI46_01090at 242.239 kb on - strand, within IAI46_01090at 242.239 kb on - strand, within IAI46_01090at 242.240 kb on + strand, within IAI46_01090at 242.241 kb on - strand, within IAI46_01090at 242.269 kb on + strand, within IAI46_01090at 242.270 kb on - strand, within IAI46_01090at 242.295 kb on + strand, within IAI46_01090at 242.316 kb on + strand, within IAI46_01090at 242.317 kb on - strand, within IAI46_01090at 242.317 kb on - strand, within IAI46_01090at 242.321 kb on + strand, within IAI46_01090

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum potassium sulfate dodecahydrate 1 mM, anaerobic
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241,054 + +0.7
241,057 - +0.5
241,096 + -0.1
241,096 + -0.1
241,096 + +0.2
241,096 + +0.2
241,097 - -0.3
241,097 - +0.2
241,115 + -0.3
241,118 + -0.5
241,118 + +0.1
241,118 + -1.0
241,119 - +0.3
241,119 - +0.3
241,122 - -1.6
241,122 - -0.5
241,310 + IAI46_01080 0.78 +0.4
241,365 + -0.2
241,366 - +0.9
241,389 - -0.6
241,426 + +0.2
241,426 + +0.7
241,456 + IAI46_01085 0.15 -0.3
241,456 + IAI46_01085 0.15 -0.1
241,568 - IAI46_01085 0.35 -0.5
241,656 + IAI46_01085 0.50 -0.5
241,768 + IAI46_01085 0.70 +0.6
241,768 + IAI46_01085 0.70 +0.3
241,769 - IAI46_01085 0.70 +0.1
241,804 + IAI46_01085 0.76 +1.4
241,922 + -0.7
241,922 + +1.4
241,935 + -0.3
241,935 + +0.5
241,955 + +0.1
241,956 - -0.2
241,981 + +0.0
241,981 + -1.4
241,981 + +1.3
241,981 + -1.8
241,982 - +0.5
241,983 + -0.4
242,003 - +0.2
242,009 + -1.5
242,012 + +0.3
242,013 - -0.8
242,013 - +0.2
242,020 + IAI46_01090 0.10 -1.8
242,020 + IAI46_01090 0.10 +0.4
242,060 + IAI46_01090 0.15 -0.6
242,061 - IAI46_01090 0.16 +0.5
242,061 - IAI46_01090 0.16 +0.2
242,064 + IAI46_01090 0.16 -0.1
242,148 - IAI46_01090 0.27 -0.0
242,206 - IAI46_01090 0.34 -0.3
242,238 + IAI46_01090 0.39 +0.9
242,238 + IAI46_01090 0.39 +1.5
242,239 - IAI46_01090 0.39 -1.0
242,239 - IAI46_01090 0.39 -1.8
242,239 - IAI46_01090 0.39 +0.4
242,239 - IAI46_01090 0.39 +0.6
242,240 + IAI46_01090 0.39 -0.8
242,241 - IAI46_01090 0.39 +0.1
242,269 + IAI46_01090 0.43 -0.6
242,270 - IAI46_01090 0.43 +0.8
242,295 + IAI46_01090 0.46 -0.4
242,316 + IAI46_01090 0.49 +0.2
242,317 - IAI46_01090 0.49 +0.1
242,317 - IAI46_01090 0.49 +0.9
242,321 + IAI46_01090 0.49 +0.0

Or see this region's nucleotide sequence