Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28615

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28610 and ABID97_RS28615 are separated by 54 nucleotidesABID97_RS28615 and ABID97_RS28620 overlap by 110 nucleotidesABID97_RS28620 and ABID97_RS28625 are separated by 101 nucleotides ABID97_RS28610: ABID97_RS28610 - tripartite tricarboxylate transporter substrate-binding protein, at 641,980 to 642,939 _RS28610 ABID97_RS28615: ABID97_RS28615 - CoA transferase, at 642,994 to 643,425 _RS28615 ABID97_RS28620: ABID97_RS28620 - CoA transferase, at 643,316 to 644,203 _RS28620 ABID97_RS28625: ABID97_RS28625 - MaoC family dehydratase N-terminal domain-containing protein, at 644,305 to 645,447 _RS28625 Position (kb) 642 643 644Strain fitness (log2 ratio) -1 0 1at 642.686 kb on + strand, within ABID97_RS28610at 642.801 kb on - strand, within ABID97_RS28610at 642.939 kb on + strandat 642.943 kb on + strandat 642.954 kb on + strandat 643.521 kb on + strand, within ABID97_RS28620at 643.522 kb on - strand, within ABID97_RS28620at 643.651 kb on - strand, within ABID97_RS28620at 643.809 kb on + strand, within ABID97_RS28620at 643.809 kb on + strand, within ABID97_RS28620at 643.998 kb on + strand, within ABID97_RS28620

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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642,686 + ABID97_RS28610 0.74 -0.5
642,801 - ABID97_RS28610 0.86 +0.5
642,939 + -0.2
642,943 + +0.9
642,954 + -0.6
643,521 + ABID97_RS28620 0.23 -0.1
643,522 - ABID97_RS28620 0.23 -0.1
643,651 - ABID97_RS28620 0.38 -0.9
643,809 + ABID97_RS28620 0.56 +0.7
643,809 + ABID97_RS28620 0.56 -0.3
643,998 + ABID97_RS28620 0.77 -0.6

Or see this region's nucleotide sequence