Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS11610 and ABID97_RS11615 are separated by 24 nucleotides ABID97_RS11615 and ABID97_RS11620 overlap by 4 nucleotides ABID97_RS11620 and ABID97_RS11625 are separated by 14 nucleotides
ABID97_RS11610: ABID97_RS11610 - NADP-dependent oxidoreductase, at 2,398,618 to 2,399,664
_RS11610
ABID97_RS11615: ABID97_RS11615 - NAD(P)H-dependent oxidoreductase, at 2,399,689 to 2,400,267
_RS11615
ABID97_RS11620: ABID97_RS11620 - nitronate monooxygenase, at 2,400,264 to 2,401,196
_RS11620
ABID97_RS11625: ABID97_RS11625 - acyl-CoA dehydrogenase family protein, at 2,401,211 to 2,402,410
_RS11625
Position (kb) 2399
2400
2401 Strain fitness (log2 ratio) -2
-1
0
1 at 2398.745 kb on + strand, within ABID97_RS11610 at 2399.249 kb on + strand, within ABID97_RS11610 at 2399.286 kb on - strand, within ABID97_RS11610 at 2399.286 kb on - strand, within ABID97_RS11610 at 2399.520 kb on + strand, within ABID97_RS11610 at 2400.569 kb on - strand, within ABID97_RS11620 at 2400.906 kb on - strand, within ABID97_RS11620 at 2400.906 kb on - strand, within ABID97_RS11620 at 2401.266 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 2,398,745 + ABID97_RS11610 0.12 +1.0 2,399,249 + ABID97_RS11610 0.60 -0.3 2,399,286 - ABID97_RS11610 0.64 -0.2 2,399,286 - ABID97_RS11610 0.64 -2.0 2,399,520 + ABID97_RS11610 0.86 -1.6 2,400,569 - ABID97_RS11620 0.33 -0.1 2,400,906 - ABID97_RS11620 0.69 +0.2 2,400,906 - ABID97_RS11620 0.69 -0.1 2,401,266 + -0.2
Or see this region's nucleotide sequence