Experiment: D-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09605 and ABID97_RS09610 overlap by 24 nucleotides ABID97_RS09610 and ABID97_RS09615 are separated by 9 nucleotides ABID97_RS09615 and ABID97_RS09620 are separated by 43 nucleotides ABID97_RS09620 and ABID97_RS09625 are separated by 109 nucleotides ABID97_RS09625 and ABID97_RS09630 overlap by 4 nucleotides
ABID97_RS09605: ABID97_RS09605 - S24 family peptidase, at 2,014,158 to 2,014,904
_RS09605
ABID97_RS09610: ABID97_RS09610 - Cro/CI family transcriptional regulator, at 2,014,881 to 2,015,123
_RS09610
ABID97_RS09615: ABID97_RS09615 - hypothetical protein, at 2,015,133 to 2,015,375
_RS09615
ABID97_RS09620: ABID97_RS09620 - hypothetical protein, at 2,015,419 to 2,015,685
_RS09620
ABID97_RS09625: ABID97_RS09625 - hypothetical protein, at 2,015,795 to 2,016,112
_RS09625
ABID97_RS09630: ABID97_RS09630 - hypothetical protein, at 2,016,109 to 2,017,041
_RS09630
Position (kb)
2015
2016 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2014.899 kb on - strand at 2014.899 kb on - strand at 2015.059 kb on + strand, within ABID97_RS09610 at 2015.060 kb on - strand, within ABID97_RS09610 at 2015.060 kb on - strand, within ABID97_RS09610 at 2015.369 kb on - strand at 2015.627 kb on - strand, within ABID97_RS09620 at 2015.697 kb on - strand at 2015.712 kb on + strand at 2015.712 kb on + strand at 2015.713 kb on - strand at 2015.734 kb on - strand at 2015.734 kb on - strand at 2015.734 kb on - strand at 2015.810 kb on + strand at 2015.811 kb on - strand at 2016.118 kb on + strand at 2016.259 kb on + strand, within ABID97_RS09630 at 2016.260 kb on - strand, within ABID97_RS09630 at 2016.459 kb on - strand, within ABID97_RS09630
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (C) remove 2,014,899 - -0.4 2,014,899 - +2.7 2,015,059 + ABID97_RS09610 0.73 +1.7 2,015,060 - ABID97_RS09610 0.74 -1.2 2,015,060 - ABID97_RS09610 0.74 +0.6 2,015,369 - -0.9 2,015,627 - ABID97_RS09620 0.78 -0.4 2,015,697 - +0.7 2,015,712 + -0.2 2,015,712 + +3.1 2,015,713 - +1.1 2,015,734 - +1.2 2,015,734 - +0.3 2,015,734 - -2.7 2,015,810 + +0.1 2,015,811 - +2.4 2,016,118 + -0.5 2,016,259 + ABID97_RS09630 0.16 -0.4 2,016,260 - ABID97_RS09630 0.16 -0.5 2,016,459 - ABID97_RS09630 0.38 -0.5
Or see this region's nucleotide sequence